View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10821_high_20 (Length: 264)

Name: NF10821_high_20
Description: NF10821
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10821_high_20
NF10821_high_20
[»] chr1 (2 HSPs)
chr1 (6-245)||(1718061-1718300)
chr1 (142-188)||(38483819-38483865)
[»] chr3 (13 HSPs)
chr3 (135-239)||(26647851-26647955)
chr3 (138-233)||(26654001-26654096)
chr3 (135-209)||(20033501-20033575)
chr3 (136-212)||(19951998-19952074)
chr3 (142-233)||(20015375-20015466)
chr3 (143-245)||(20007447-20007549)
chr3 (157-211)||(19849871-19849925)
chr3 (135-193)||(20006421-20006479)
chr3 (135-212)||(20035770-20035847)
chr3 (6-133)||(26648113-26648243)
chr3 (143-212)||(19813157-19813226)
chr3 (135-199)||(19956971-19957035)
chr3 (8-64)||(19952284-19952340)
[»] chr5 (3 HSPs)
chr5 (135-219)||(26354094-26354178)
chr5 (142-212)||(9815908-9815978)
chr5 (143-193)||(27472660-27472710)
[»] chr8 (1 HSPs)
chr8 (135-209)||(22685507-22685581)
[»] chr7 (2 HSPs)
chr7 (147-211)||(12582137-12582201)
chr7 (147-211)||(12521888-12521952)
[»] scaffold0038 (1 HSPs)
scaffold0038 (144-183)||(19562-19601)
[»] chr6 (1 HSPs)
chr6 (144-183)||(28219064-28219103)


Alignment Details
Target: chr1 (Bit Score: 228; Significance: 1e-126; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 228; E-Value: 1e-126
Query Start/End: Original strand, 6 - 245
Target Start/End: Complemental strand, 1718300 - 1718061
Alignment:
Q  6 ttgaaagttcgatgttatcttttgaaattgacctcttcagtggtaatatctttttataaccagctaaagatgacgaacattggttatttaaatgcttaga 105  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||    
T  1718300 ttgaaagttcgatgttatcttttgaaattgacctcttcagtggtaatatcttttcataaccagctaaagatgacgaacattggttatttaaatgcttaga 1718201  T
Q  106 ttcatggattatgccaccacatttgtacctaagagtgtcaacaagattgggaggaaatccaggtggaacaccaacatcattaccacttttgttagctttt 205  Q
    ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  1718200 ttcatggattatgccaccacacttgtacctaagagtgtcaacaagattgggaggaaatccaggtggaacaccaacatcattaccacttttgttagctttt 1718101  T
Q  206 cctacatcagctctaggtttcgttgaacatgcacgtctct 245  Q
    |||||||||||||||||||||||||||||||||| |||||    
T  1718100 cctacatcagctctaggtttcgttgaacatgcacatctct 1718061  T

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Target: chr1; HSP #2
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 142 - 188
Target Start/End: Complemental strand, 38483865 - 38483819
Alignment:
Q  142 gtcaacaagattgggaggaaatccaggtggaacaccaacatcattac 188  Q
    |||||||||||  ||||||||| ||||||||||||||||||||||||    
T  38483865 gtcaacaagatctggaggaaattcaggtggaacaccaacatcattac 38483819  T

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Target: chr3 (Bit Score: 65; Significance: 1e-28; HSPs: 13)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 135 - 239
Target Start/End: Complemental strand, 26647955 - 26647851
Alignment:
Q  135 taagagtgtcaacaagattgggaggaaatccaggtggaacaccaacatcattaccacttttgttagcttttcctacatcagctctaggtttcgttgaaca 234  Q
    |||||||||||||||||||||||||||| ||||| |||||||||||||||||||||||| ||||| |||||||||||  | ||||| ||||| ||||||     
T  26647955 taagagtgtcaacaagattgggaggaaaaccagggggaacaccaacatcattaccacttatgttatcttttcctacacaaactctatgtttccttgaact 26647856  T
Q  235 tgcac 239  Q
    |||||    
T  26647855 tgcac 26647851  T

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Target: chr3; HSP #2
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 138 - 233
Target Start/End: Complemental strand, 26654096 - 26654001
Alignment:
Q  138 gagtgtcaacaagattgggaggaaatccaggtggaacaccaacatcattaccacttttgttagcttttcctacatcagctctaggtttcgttgaac 233  Q
    ||||||||||||||||||||||||||||||||||||||| || |||   |||||||||| ||||||| ||||||| ||||||||||||| ||||||    
T  26654096 gagtgtcaacaagattgggaggaaatccaggtggaacactaaaatcgacaccacttttgctagctttccctacatgagctctaggtttccttgaac 26654001  T

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Target: chr3; HSP #3
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 135 - 209
Target Start/End: Original strand, 20033501 - 20033575
Alignment:
Q  135 taagagtgtcaacaagattgggaggaaatccaggtggaacaccaacatcattaccacttttgttagcttttccta 209  Q
    |||||||||||||||||||||||||||||||||||| ||||||| ||||||||| ||||| |||||| |||||||    
T  20033501 taagagtgtcaacaagattgggaggaaatccaggtgcaacaccatcatcattactactttcgttagcatttccta 20033575  T

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Target: chr3; HSP #4
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 136 - 212
Target Start/End: Complemental strand, 19952074 - 19951998
Alignment:
Q  136 aagagtgtcaacaagattgggaggaaatccaggtggaacaccaacatcattaccacttttgttagcttttcctacat 212  Q
    |||||| ||||||  ||||| ||||||||||||||||||||||||| ||||||||||| ||||||||||||||||||    
T  19952074 aagagtttcaacacaattggtaggaaatccaggtggaacaccaacaacattaccacttatgttagcttttcctacat 19951998  T

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Target: chr3; HSP #5
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 142 - 233
Target Start/End: Original strand, 20015375 - 20015466
Alignment:
Q  142 gtcaacaagattgggaggaaatccaggtggaacaccaacatcattaccacttttgttagcttttcctacatcagctctaggtttcgttgaac 233  Q
    ||||||||||||||||  |||||||||||||||||||||||||||||  ||| |||||| |||||||| || || |||| ||||| ||||||    
T  20015375 gtcaacaagattgggacaaaatccaggtggaacaccaacatcattactgcttctgttagtttttcctagatgaggtctatgtttccttgaac 20015466  T

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Target: chr3; HSP #6
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 143 - 245
Target Start/End: Original strand, 20007447 - 20007549
Alignment:
Q  143 tcaacaagattgggaggaaatccaggtggaacaccaacatcattaccacttttgttagcttttcctacatcagctctaggtttcgttgaacatgcacgtc 242  Q
    |||||||||||||||||||||||||||||||||||||||||| | | |||| |||||| || |||||||| || |||| || || |||||  ||||| ||    
T  20007447 tcaacaagattgggaggaaatccaggtggaacaccaacatcaatccaacttctgttagattgtcctacatgagatctatgtctccttgaaattgcacttc 20007546  T
Q  243 tct 245  Q
    |||    
T  20007547 tct 20007549  T

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Target: chr3; HSP #7
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 157 - 211
Target Start/End: Complemental strand, 19849925 - 19849871
Alignment:
Q  157 aggaaatccaggtggaacaccaacatcattaccacttttgttagcttttcctaca 211  Q
    |||||||||| |||||| ||||||||||||||||||| |||||||||||||||||    
T  19849925 aggaaatccaagtggaaaaccaacatcattaccacttctgttagcttttcctaca 19849871  T

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Target: chr3; HSP #8
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 135 - 193
Target Start/End: Original strand, 20006421 - 20006479
Alignment:
Q  135 taagagtgtcaacaagattgggaggaaatccaggtggaacaccaacatcattaccactt 193  Q
    |||||||| |||||||||||||||||||||||  |||||||||||||||| ||||||||    
T  20006421 taagagtgccaacaagattgggaggaaatccatctggaacaccaacatcaataccactt 20006479  T

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Target: chr3; HSP #9
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 135 - 212
Target Start/End: Original strand, 20035770 - 20035847
Alignment:
Q  135 taagagtgtcaacaagattgggaggaaatccaggtggaacaccaacatcattaccacttttgttagcttttcctacat 212  Q
    ||||||| |||||||||||||||| |||||||||  |||||| ||| ||| |||||||||||||   |||||||||||    
T  20035770 taagagtatcaacaagattgggagaaaatccaggctgaacacaaacttcaataccacttttgtttaattttcctacat 20035847  T

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Target: chr3; HSP #10
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 6 - 133
Target Start/End: Complemental strand, 26648243 - 26648113
Alignment:
Q  6 ttgaaagttcgatgttatcttttgaaattgacctcttcagtggtaatatctttttataaccagctaaagatgacgaaca---ttggttatttaaatgctt 102  Q
    |||||||||| |||||||||  ||||| || ||| ||||||||||||||||||| ||||   ||| |||| |  |||||   |||||    |||||||||    
T  26648243 ttgaaagttcaatgttatctactgaaactggccttttcagtggtaatatcttttcataatatgctgaagaggctgaacaactttggtccaataaatgctt 26648144  T
Q  103 agattcatggattatgccaccacatttgtac 133  Q
    ||||||||||||| |||||||||| ||||||    
T  26648143 agattcatggattttgccaccacacttgtac 26648113  T

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Target: chr3; HSP #11
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 143 - 212
Target Start/End: Complemental strand, 19813226 - 19813157
Alignment:
Q  143 tcaacaagattgggaggaaatccaggtggaacaccaacatcattaccacttttgttagcttttcctacat 212  Q
    ||||||||||||||||||||| ||||||||||| || || || |||||||| ||| |  |||||||||||    
T  19813226 tcaacaagattgggaggaaattcaggtggaacagcagcaccaataccacttctgtcaaattttcctacat 19813157  T

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Target: chr3; HSP #12
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 135 - 199
Target Start/End: Complemental strand, 19957035 - 19956971
Alignment:
Q  135 taagagtgtcaacaagattgggaggaaatccaggtggaacaccaacatcattaccacttttgtta 199  Q
    ||||||| |||||||||||||||| |||||||||| |||||| ||| ||  |||||||| |||||    
T  19957035 taagagtatcaacaagattgggagaaaatccaggttgaacacaaacctccataccacttctgtta 19956971  T

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Target: chr3; HSP #13
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 8 - 64
Target Start/End: Complemental strand, 19952340 - 19952284
Alignment:
Q  8 gaaagttcgatgttatcttttgaaattgacctcttcagtggtaatatctttttataa 64  Q
    |||||||| ||| ||||||| |||| || ||| ||||||||||||||||||| ||||    
T  19952340 gaaagttcaatgctatctttcgaaactggccttttcagtggtaatatcttttcataa 19952284  T

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Target: chr5 (Bit Score: 57; Significance: 7e-24; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 135 - 219
Target Start/End: Original strand, 26354094 - 26354178
Alignment:
Q  135 taagagtgtcaacaagattgggaggaaatccaggtggaacaccaacatcattaccacttttgttagcttttcctacatcagctct 219  Q
    ||||| |||||||||||||||||||||||||||||||||||||||||||||||  |||| |||||| |||||| |||| ||||||    
T  26354094 taagaatgtcaacaagattgggaggaaatccaggtggaacaccaacatcattaatacttctgttagtttttccaacatgagctct 26354178  T

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Target: chr5; HSP #2
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 142 - 212
Target Start/End: Complemental strand, 9815978 - 9815908
Alignment:
Q  142 gtcaacaagattgggaggaaatccaggtggaacaccaacatcattaccacttttgttagcttttcctacat 212  Q
    |||||||||||||||||||||| ||||||||| |||||||||||||| |||| ||| |  |||||||||||    
T  9815978 gtcaacaagattgggaggaaattcaggtggaaaaccaacatcattacaacttctgtcaatttttcctacat 9815908  T

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Target: chr5; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 143 - 193
Target Start/End: Complemental strand, 27472710 - 27472660
Alignment:
Q  143 tcaacaagattgggaggaaatccaggtggaacaccaacatcattaccactt 193  Q
    ||||||| ||||  ||| |||||| ||||||||||||||||||||||||||    
T  27472710 tcaacaacattgaaagggaatccaagtggaacaccaacatcattaccactt 27472660  T

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Target: chr8 (Bit Score: 47; Significance: 6e-18; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 135 - 209
Target Start/End: Original strand, 22685507 - 22685581
Alignment:
Q  135 taagagtgtcaacaagattgggaggaaatccaggtggaacaccaacatcattaccacttttgttagcttttccta 209  Q
    |||| |||| ||||||||||  || |||||||||||||||||||||||||||||||||| |||||||| ||||||    
T  22685507 taagtgtgttaacaagattgaaagaaaatccaggtggaacaccaacatcattaccacttctgttagctattccta 22685581  T

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Target: chr7 (Bit Score: 33; Significance: 0.000000001; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 147 - 211
Target Start/End: Complemental strand, 12582201 - 12582137
Alignment:
Q  147 caagattgggaggaaatccaggtggaacaccaacatcattaccacttttgttagcttttcctaca 211  Q
    ||||||||||| |||||| |||  || ||||||||| | |||| |||||||||||||||||||||    
T  12582201 caagattgggacgaaatctaggctgaccaccaacatgaataccgcttttgttagcttttcctaca 12582137  T

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Target: chr7; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 147 - 211
Target Start/End: Complemental strand, 12521952 - 12521888
Alignment:
Q  147 caagattgggaggaaatccaggtggaacaccaacatcattaccacttttgttagcttttcctaca 211  Q
    |||||||| || |||||| |||  || ||||||||| | |||| |||||||||||||||||||||    
T  12521952 caagattgagacgaaatctaggctgaccaccaacatgaataccgcttttgttagcttttcctaca 12521888  T

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Target: scaffold0038 (Bit Score: 32; Significance: 0.000000006; HSPs: 1)
Name: scaffold0038
Description:

Target: scaffold0038; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 144 - 183
Target Start/End: Original strand, 19562 - 19601
Alignment:
Q  144 caacaagattgggaggaaatccaggtggaacaccaacatc 183  Q
    |||||||| ||||||||||||||||| |||||||||||||    
T  19562 caacaagaatgggaggaaatccaggtagaacaccaacatc 19601  T

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Target: chr6 (Bit Score: 32; Significance: 0.000000006; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 144 - 183
Target Start/End: Original strand, 28219064 - 28219103
Alignment:
Q  144 caacaagattgggaggaaatccaggtggaacaccaacatc 183  Q
    |||||||| ||||||||||||||||| |||||||||||||    
T  28219064 caacaagaatgggaggaaatccaggtagaacaccaacatc 28219103  T

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