View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10821_high_25 (Length: 250)
Name: NF10821_high_25
Description: NF10821
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10821_high_25 |
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Alignment Details
Target: chr1 (Bit Score: 225; Significance: 1e-124; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 225; E-Value: 1e-124
Query Start/End: Original strand, 1 - 237
Target Start/End: Original strand, 8756224 - 8756460
Alignment:
| Q |
1 |
tttctgtaagacgcggcgacgactcgagcacactcactaatcacattgcctttcggttcaaccttaacatagagtgaagaagctaagaagaaagacacca |
100 |
Q |
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| T |
8756224 |
tttctgtaagacgcgacgacgactcgagcacactcactaatcacattgcctttcggttcaaccttaacatagagtgaagaagctaagaacaaagacacca |
8756323 |
T |
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| Q |
101 |
tagatatgaacatgaagacaacagggacaccaaatccaataatccaaccaaaattttcttgaatgtatgccaagatggtcgttccaattaaaactgcagc |
200 |
Q |
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| T |
8756324 |
tagatatgaacatgaagacaacagggacaccaaatccaataatccaaccaaaattttcttgaatgtacgccaagatggtcgttccaattaaaactgcagc |
8756423 |
T |
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| Q |
201 |
tgctgttaaagcatagctccaattaaagtagccctct |
237 |
Q |
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| T |
8756424 |
tgctgttaaagcatagctccaattaaagtagccctct |
8756460 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 155; E-Value: 2e-82
Query Start/End: Original strand, 7 - 237
Target Start/End: Original strand, 8748679 - 8748909
Alignment:
| Q |
7 |
taagacgcggcgacgactcgagcacactcactaatcacattgcctttcggttcaaccttaacatagagtgaagaagctaagaagaaagacaccatagata |
106 |
Q |
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||||||||| | || ||||||||||||||||||||||| |||||||| ||||| ||||| ||||||||||||||||||| |||||||| |||||||||| |
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| T |
8748679 |
taagacgcgacaaccactcgagcacactcactaatcacgttgccttttggttccaccttgacatagagtgaagaagctagaaagaaagataccatagata |
8748778 |
T |
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| Q |
107 |
tgaacatgaagacaacagggacaccaaatccaataatccaaccaaaattttcttgaatgtatgccaagatggtcgttccaattaaaactgcagctgctgt |
206 |
Q |
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| T |
8748779 |
tgaacatgaacacaacaggtaaaccaaatccaacaatccaaccaaaattttcttgaatatatgccaaaatggtcgttccaattaaaactgcagctgttgc |
8748878 |
T |
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| Q |
207 |
taaagcatagctccaattaaagtagccctct |
237 |
Q |
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| T |
8748879 |
taaagcataggtccaattaaagtagccctct |
8748909 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 153; E-Value: 3e-81
Query Start/End: Original strand, 1 - 237
Target Start/End: Original strand, 8766243 - 8766479
Alignment:
| Q |
1 |
tttctgtaagacgcggcgacgactcgagcacactcactaatcacattgcctttcggttcaaccttaacatagagtgaagaagctaagaagaaagacacca |
100 |
Q |
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||||||||||||||| ||| ||||||||| |||||||||||||||||||||| ||||| ||||||||||||||||||||| |||| ||||||||||||| |
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| T |
8766243 |
tttctgtaagacgcgatgacaactcgagcaaactcactaatcacattgccttttggttccaccttaacatagagtgaagaacctaaaaagaaagacacca |
8766342 |
T |
|
| Q |
101 |
tagatatgaacatgaagacaacagggacaccaaatccaataatccaaccaaaattttcttgaatgtatgccaagatggtcgttccaattaaaactgcagc |
200 |
Q |
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|||||||||||||||| |||||||| ||||||||||||| |||||||||||| |||||||||| |||||||| | |||| ||||| ||| |||||||| |
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| T |
8766343 |
tagatatgaacatgaacacaacaggtacaccaaatccaaccatccaaccaaaaatttcttgaatatatgccaaaacggtcattccagttaggactgcagc |
8766442 |
T |
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| Q |
201 |
tgctgttaaagcatagctccaattaaagtagccctct |
237 |
Q |
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|||||||||||||||| |||||||||||||||||||| |
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| T |
8766443 |
tgctgttaaagcataggtccaattaaagtagccctct |
8766479 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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