View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10821_high_33 (Length: 240)
Name: NF10821_high_33
Description: NF10821
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10821_high_33 |
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Alignment Details
Target: chr1 (Bit Score: 177; Significance: 2e-95; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 177; E-Value: 2e-95
Query Start/End: Original strand, 1 - 225
Target Start/End: Complemental strand, 47719627 - 47719403
Alignment:
| Q |
1 |
gaaataaaatatactaattattatgtggnnnnnnnngttataaataaatatggatattaggtggttagtgatgtgtaaaaagactgtcatgtaatagtcc |
100 |
Q |
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| T |
47719627 |
gaaataaaatatactaattattatgtggaaaaaaaagttataaataaatatggatattaggtggttagtgatgtgtaaaaagactgtcatgtaatagtcc |
47719528 |
T |
|
| Q |
101 |
atgtcaacagttgactatcggtcaactaacagaaggtcttgattnnnnnnnntagttcaagtatctaattagaaaataattaatttagggacctatataa |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
47719527 |
atgtcaacagttgactatcggtcaactaacagaaggtcttgattaaaaaaaatagttcaagtatctaattagaaaataattaatttagggacctatataa |
47719428 |
T |
|
| Q |
201 |
aagatttcaaatagttgaggaacct |
225 |
Q |
| |
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||||||||||||||||||||||||| |
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| T |
47719427 |
aagatttcaaatagttgaggaacct |
47719403 |
T |
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