View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10821_high_41 (Length: 231)
Name: NF10821_high_41
Description: NF10821
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10821_high_41 |
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Alignment Details
Target: chr3 (Bit Score: 185; Significance: 1e-100; HSPs: 4)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 185; E-Value: 1e-100
Query Start/End: Original strand, 1 - 216
Target Start/End: Complemental strand, 44001123 - 44000907
Alignment:
| Q |
1 |
ggcaagagcaaatt-ccaaattattgccttataataacctaaaaagactattgaaggaaattgggcaattgagttgagtctgtgtgacagtagagtttga |
99 |
Q |
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| T |
44001123 |
ggcaagagcaaatttccaaattattgccgtataataacctaaaaagactattgaaggaaattgggcaattgagttgagtctgtgtgacagtagagtttga |
44001024 |
T |
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| Q |
100 |
tacattgctgaaaacagatgaaattgaggaatcccaaagaagtagttcatttgggtcgtttacactgcttacaatgagacgcttctttgacatgcgaagg |
199 |
Q |
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| T |
44001023 |
tacattgctgaaaacagatgaaattgaggaatcccaaagaagtagttcatctggatcgtttacactgcttacaatgagacgcttctttgacatgcaaagc |
44000924 |
T |
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| Q |
200 |
tgcttctttgtgaatgt |
216 |
Q |
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|||||||||| |||||| |
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| T |
44000923 |
tgcttctttgcgaatgt |
44000907 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 48 - 209
Target Start/End: Complemental strand, 43997100 - 43996936
Alignment:
| Q |
48 |
tattgaaggaaattgggcaattgagttgagtctgtgtgacagt---agagtttgatacattgctgaaaacagatgaaattgaggaatcccaaagaagtag |
144 |
Q |
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| T |
43997100 |
tattcaaggaaattgggcacttgagttgtgtctgtgtgacgctgctagagttggatgcattgctgaaaacagaggaaattgatgaatcccaaagaaatga |
43997001 |
T |
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| Q |
145 |
ttcatttgggtcgtttacactgcttacaatgagacgcttctttgacatgcgaaggtgcttctttg |
209 |
Q |
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| T |
43997000 |
ttcacctgagtcgtttaaactgcttacaatgagatgcttctttgacatgcgaaggtgcttctttg |
43996936 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 53 - 209
Target Start/End: Complemental strand, 43991518 - 43991356
Alignment:
| Q |
53 |
aaggaaattgggcaattgagttgagtctgtgtgacagt---agagtttgatacattgctgaaaacagatgaaattgaggaatcccaaagaagtagttcat |
149 |
Q |
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||||||| ||||||| ||||||||||||||||||| | |||||| ||| |||||||||||||||| ||||||||||||||||||| |||| ||||| |
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| T |
43991518 |
aaggaaaatgggcaaatgagttgagtctgtgtgacgctgctagagttggatgcattgctgaaaacagaggaaattgaggaatcccaaaaaagtggttcac |
43991419 |
T |
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| Q |
150 |
ttgggtcgtttacactgcttacaatgag----acgcttctttgacatgcgaaggtgcttctttg |
209 |
Q |
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| T |
43991418 |
ctgagtcgtttacactgcttacaatgagtgctac-cctctttgacatgcgaaggtgcttctttg |
43991356 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 173 - 214
Target Start/End: Original strand, 43687002 - 43687043
Alignment:
| Q |
173 |
atgagacgcttctttgacatgcgaaggtgcttctttgtgaat |
214 |
Q |
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|||||| | |||||||||||||||||||||||||||| |||| |
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| T |
43687002 |
atgagatggttctttgacatgcgaaggtgcttctttgagaat |
43687043 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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