View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF10821_high_43 (Length: 228)
Name: NF10821_high_43
Description: NF10821
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10821_high_43 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 205; Significance: 1e-112; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 205; E-Value: 1e-112
Query Start/End: Original strand, 1 - 209
Target Start/End: Complemental strand, 11606254 - 11606046
Alignment:
| Q |
1 |
tggcagatagttcagtatcatttttattggacaaactgagttggttacttcaagaagaagtaattctacaaaaaggggtccgtgaagatgttcaatacat |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
11606254 |
tggcagatagttcagtatcatttttattggacaaactgagttggttacttcaagaagaagtaattctacaaaaaggggtccgtgaagatgttcaatacat |
11606155 |
T |
|
| Q |
101 |
caaagacgaactcaaacgccacaatgccatcttaacgagagatgatgcattggaagacaaagatccagaactcaaagtatgggttaaaagggtaagagat |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |
|
|
| T |
11606154 |
caaagacgaactcaaacgccacaatgccatcttaacgagagatgatgcattggaagacaaagatcctgaactcaaagtatgggttaaaagggtaagagat |
11606055 |
T |
|
| Q |
201 |
attgctcaa |
209 |
Q |
| |
|
||||||||| |
|
|
| T |
11606054 |
attgctcaa |
11606046 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 121; E-Value: 4e-62
Query Start/End: Original strand, 1 - 209
Target Start/End: Original strand, 11639810 - 11640018
Alignment:
| Q |
1 |
tggcagatagttcagtatcatttttattggacaaactgagttggttacttcaagaagaagtaattctacaaaaaggggtccgtgaagatgttcaatacat |
100 |
Q |
| |
|
||||||| |||||||||||||||||||||||||| || | |||||||||||||| ||||||| |||||||| ||| ||||||||||||||||||||||| |
|
|
| T |
11639810 |
tggcagacagttcagtatcatttttattggacaagctaacatggttacttcaagaggaagtaaatctacaaagaggagtccgtgaagatgttcaatacat |
11639909 |
T |
|
| Q |
101 |
caaagacgaactcaaacgccacaatgccatcttaacgagagatgatgcattggaagacaaagatccagaactcaaagtatgggttaaaagggtaagagat |
200 |
Q |
| |
|
|||||||||||| |||||||||| ||||||| | | || |||| |||||||||||||||| || ||||||||||||||||||||||| ||||||||| |
|
|
| T |
11639910 |
caaagacgaacttgaacgccacaagtccatcttgatgttagctgattcattggaagacaaagaccctgaactcaaagtatgggttaaaagagtaagagat |
11640009 |
T |
|
| Q |
201 |
attgctcaa |
209 |
Q |
| |
|
||||||||| |
|
|
| T |
11640010 |
attgctcaa |
11640018 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 113; E-Value: 2e-57
Query Start/End: Original strand, 1 - 209
Target Start/End: Original strand, 11621319 - 11621527
Alignment:
| Q |
1 |
tggcagatagttcagtatcatttttattggacaaactgagttggttacttcaagaagaagtaattctacaaaaaggggtccgtgaagatgttcaatacat |
100 |
Q |
| |
|
||||||| ||||||||||||||||| ||||| || || | |||||||||||||||||| |||| |||||||| ||| ||||||||||||||||||||||| |
|
|
| T |
11621319 |
tggcagagagttcagtatcatttttgttggagaagctaacttggttacttcaagaagaggtaaatctacaaagaggcgtccgtgaagatgttcaatacat |
11621418 |
T |
|
| Q |
101 |
caaagacgaactcaaacgccacaatgccatcttaacgagagatgatgcattggaagacaaagatccagaactcaaagtatgggttaaaagggtaagagat |
200 |
Q |
| |
|
||| ||||||||| |||||||||| |||||||| | | || |||| || ||||||||||||| || |||||||||||||||||||||||||| |||| | |
|
|
| T |
11621419 |
caacgacgaactcgaacgccacaaggccatcttgatggcagctgattcaatggaagacaaagaccctgaactcaaagtatgggttaaaagggttagagtt |
11621518 |
T |
|
| Q |
201 |
attgctcaa |
209 |
Q |
| |
|
||||||||| |
|
|
| T |
11621519 |
attgctcaa |
11621527 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University