View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10821_high_6 (Length: 416)
Name: NF10821_high_6
Description: NF10821
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10821_high_6 |
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Alignment Details
Target: chr6 (Bit Score: 96; Significance: 6e-47; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 96; E-Value: 6e-47
Query Start/End: Original strand, 20 - 115
Target Start/End: Complemental strand, 10102372 - 10102277
Alignment:
| Q |
20 |
gttaaggctttgctttcaaattacatccaatttgatgtgcaagggttcttccgacttgccaaaattgataatacactgagaactcaaatgagagca |
115 |
Q |
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| T |
10102372 |
gttaaggctttgctttcaaattacatccaatttgatgtgcaagggttcttccgacttgccaaaattgataatacactgagaactcaaatgagagca |
10102277 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 353 - 408
Target Start/End: Complemental strand, 10080186 - 10080131
Alignment:
| Q |
353 |
aaagaatattttctataacggttgttttccatcttcaacctagtccaatttcattt |
408 |
Q |
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| T |
10080186 |
aaagaatattttcttcaatggttgttttccattttcagcttagtccaatttcattt |
10080131 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 353 - 408
Target Start/End: Complemental strand, 10096840 - 10096785
Alignment:
| Q |
353 |
aaagaatattttctataacggttgttttccatcttcaacctagtccaatttcattt |
408 |
Q |
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| T |
10096840 |
aaagaatattttcttcgatggttgttttccatcttcagcgtagtccaatttcattt |
10096785 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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