View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10821_high_7 (Length: 408)
Name: NF10821_high_7
Description: NF10821
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10821_high_7 |
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Alignment Details
Target: chr8 (Bit Score: 390; Significance: 0; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 390; E-Value: 0
Query Start/End: Original strand, 1 - 390
Target Start/End: Original strand, 7416647 - 7417036
Alignment:
| Q |
1 |
aataaaatccccaatattgagaattccattaagtaaaaacaactcatccaacatcttcttaaactcatcaggggaaataactgcattatcagtcttttcc |
100 |
Q |
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| T |
7416647 |
aataaaatccccaatattgagaattccattaagtaaaaacaactcatccaacatcttcttaaactcatcaggggaaataactgcattatcagtcttttcc |
7416746 |
T |
|
| Q |
101 |
aagtactttttccctagcaccattcgacttataacatttagactcaaagttgaaagatggtctttcaccaaaattgttttgttttttgaattgaaaagtt |
200 |
Q |
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| T |
7416747 |
aagtactttttccctagcaccattcgacttataacatttagactcaaagttgaaagatggtctttcaccaaaattgttttgttttttgaattgaaaagtt |
7416846 |
T |
|
| Q |
201 |
tatgcaaaaaatcatgcatctcttgttttcttatgtactcgtaagactcgaggcgttttgcactaaacaactccaatagacacattctacgagcttgacg |
300 |
Q |
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| T |
7416847 |
tatgcaaaaaatcatgcatctcttgttttcttatgtactcgtaagactcgaggcgttttgcactaaacaactccaatagacacattctacgagcttgacg |
7416946 |
T |
|
| Q |
301 |
ccaatatggaccatattgagaccaagttatgtctgaatagttatatgttgtgtattttccagccgacaatttgggccggccggcaagagt |
390 |
Q |
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| T |
7416947 |
ccaatatggaccatattgagaccaagttatgtctgaatagttatatgttgtgtattttccagccgacaatttgggccggccggcaagagt |
7417036 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 167; E-Value: 3e-89
Query Start/End: Original strand, 1 - 387
Target Start/End: Original strand, 7425633 - 7426019
Alignment:
| Q |
1 |
aataaaatccccaatattgagaattccattaagtaaaaacaactcatccaacatcttcttaaactcatcaggggaaataactgcattatcagtcttttcc |
100 |
Q |
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|||||||||||||| |||||| | |||||||| |||||||| ||||| ||||||||||||||||| ||||||||||||| ||||| ||| |||| ||| |
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| T |
7425633 |
aataaaatccccaacattgaggaccccattaagcaaaaacaattcatctaacatcttcttaaactcttcaggggaaataatagcattttcactcttctcc |
7425732 |
T |
|
| Q |
101 |
aagtactttttccctagcaccattcgacttataacatttagactcaaagttgaaagatggtctttcaccaaaattgttttgttttttgaattgaaaagtt |
200 |
Q |
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|| |||||||| || | ||||| |||||||||||||| ||||||||||||||||||||||| |||| |||||||||||||||||||||||| || |||| |
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| T |
7425733 |
aaatactttttgcccaaaaccatgcgacttataacattgagactcaaagttgaaagatggtccttcaacaaaattgttttgttttttgaattaaatagtt |
7425832 |
T |
|
| Q |
201 |
tatgcaaaaaatcatgcatctcttgttttcttatgtactcgtaagactcgaggcgttttgcactaaacaactccaatagacacattctacgagcttgacg |
300 |
Q |
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| T |
7425833 |
cgtgcaagaaagcatgtaactcttgttttctcatgtactcataagactcaaggcgttttacactaaacagttctagcagacacattttacgagcttgttg |
7425932 |
T |
|
| Q |
301 |
ccaatatggaccatattgagaccaagttatgtctgaatagttatatgttgtgtattttccagccgacaatttgggccggccggcaag |
387 |
Q |
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||||||||| |||||||| |||||||| |||| || |||||||| || || ||||||||||| || ||||||||||| || ||||| |
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| T |
7425933 |
ccaatatgggccatattgggaccaagtaatgttggagtagttataagtagtatattttccagcggagaatttgggccgcccagcaag |
7426019 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 120; E-Value: 3e-61
Query Start/End: Original strand, 1 - 360
Target Start/End: Original strand, 7431622 - 7431981
Alignment:
| Q |
1 |
aataaaatccccaatattgagaattccattaagtaaaaacaactcatccaacatcttcttaaactcatcaggggaaataactgcattatcagtcttttcc |
100 |
Q |
| |
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|||||||||||||||||||| | |||||||| |||||||||||||||||||||| ||||||||| ||||||||||||| |||| ||| |||| ||| |
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| T |
7431622 |
aataaaatccccaatattgaagaccccattaagcaaaaacaactcatccaacatctccttaaactcttcaggggaaataataacattttcactcttctcc |
7431721 |
T |
|
| Q |
101 |
aagtactttttccctagcaccattcgacttataacatttagactcaaagttgaaagatggtctttcaccaaaattgttttgttttttgaattgaaaagtt |
200 |
Q |
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| T |
7431722 |
aagtatttcttccccaacaccatgcggcttataatattaagactaaaagttgaaagatggtccttcaacaaaatagttttattttttgaattgaagagtt |
7431821 |
T |
|
| Q |
201 |
tatgcaaaaaatcatgcatctcttgttttcttatgtactcgtaagactcgaggcgttttgcactaaacaactccaatagacacattctacgagcttgacg |
300 |
Q |
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|||||| |||| ||| | |||| |||||| |||||||| ||||||||||| | |||| |||||||||| ||| | || ||||| |||| ||||| | |
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| T |
7431822 |
tatgcagaaaaatatgtaattcttcttttctcatgtactcataagactcgagactttttacactaaacaattccctttgaaacattttacgggcttgttg |
7431921 |
T |
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| Q |
301 |
ccaatatggaccatattgagaccaagttatgtctgaatagttatatgttgtgtattttcc |
360 |
Q |
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|||||||||| ||| | |||||| |||| || |||||||| |||||||||||||| |
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| T |
7431922 |
aaaatatggaccgtatgggttccaagtgatgttagagtagttataagttgtgtattttcc |
7431981 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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