View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10821_high_8 (Length: 397)
Name: NF10821_high_8
Description: NF10821
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10821_high_8 |
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Alignment Details
Target: chr1 (Bit Score: 328; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 328; E-Value: 0
Query Start/End: Original strand, 1 - 359
Target Start/End: Original strand, 8358225 - 8358588
Alignment:
| Q |
1 |
tgaagaggttgaatgatgaggtggaacatagaaaaatggttgctcaagtttgtgtgaagaatgttggtagtaaatgtgaaatattgaagaggtttatgag |
100 |
Q |
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| T |
8358225 |
tgaagaggttgaatgatgaggtggaacatagaaaaatggttgctcaagtttgtgtgaagaatgttggtagtaaatgtgaaatattgaagaggtttatgag |
8358324 |
T |
|
| Q |
101 |
tgaatttagtgatcaagagtctagctttttggatgagttggaagaacttgaagaacatgtttacttgtgctttctcaccgttaacaaatctaggagactt |
200 |
Q |
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| T |
8358325 |
tgaatttagtgatcaagagtcaagatttttggatgagttggaagaacttgaagaacatgtttacttgtgctttctcaccgttaacaaatctaggagactt |
8358424 |
T |
|
| Q |
201 |
gttctgcaacaaattacagagagatcacaacatta-----attatattatattaatttagaaaagaaaatatgagagacatattttaaactcaattatat |
295 |
Q |
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| T |
8358425 |
gttctgcaacaaattacagagagatcacaacattaattatattatattatattaatttagaaaagaaaatatgagagacatattttaaactcaattatat |
8358524 |
T |
|
| Q |
296 |
tgcttacgagtaatattatagaggaaataaataattcacgggcgtgattttcacacgttgcttg |
359 |
Q |
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| T |
8358525 |
tgcttacaagtaatattatagaggaaataaataattcacggacgtgattttcacacgttgcttg |
8358588 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 139; Significance: 1e-72; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 139; E-Value: 1e-72
Query Start/End: Original strand, 1 - 222
Target Start/End: Complemental strand, 28593348 - 28593124
Alignment:
| Q |
1 |
tgaagaggttgaatgatgaggtggaacatagaaaaatggttgctcaagtttgtgtgaagaat---gttggtagtaaatgtgaaatattgaagaggtttat |
97 |
Q |
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||||||||||||||||||| ||||| ||||| ||||| ||||| | ||||||||||||||| |||||||||||||||||||||||||||||| |||| |
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| T |
28593348 |
tgaagaggttgaatgatgaagtggagcataggaaaatttttgctgatgtttgtgtgaagaataatgttggtagtaaatgtgaaatattgaagagggttat |
28593249 |
T |
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| Q |
98 |
gagtgaatttagtgatcaagagtctagctttttggatgagttggaagaacttgaagaacatgtttacttgtgctttctcaccgttaacaaatctaggaga |
197 |
Q |
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|||||||| | | |||||||||||||||||||||||| |||||||||| ||||||||||||||||||||||||||||| ||| | || |||||||||||| |
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| T |
28593248 |
gagtgaatatcgagatcaagagtctagctttttggatcagttggaagagcttgaagaacatgtttacttgtgctttcttaccatcaataaatctaggaga |
28593149 |
T |
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| Q |
198 |
cttgttctgcaacaaattacagaga |
222 |
Q |
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|||||| |||||||||||||||||| |
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| T |
28593148 |
cttgttatgcaacaaattacagaga |
28593124 |
T |
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