View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10821_low_12 (Length: 423)
Name: NF10821_low_12
Description: NF10821
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10821_low_12 |
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Alignment Details
Target: chr1 (Bit Score: 371; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 371; E-Value: 0
Query Start/End: Original strand, 17 - 415
Target Start/End: Complemental strand, 45102039 - 45101641
Alignment:
| Q |
17 |
acgaattgtttggtattttttggggtttgctagtagtctatgtcaagtaacaaacattacatatatacaacaacaaaatggtccatgcataaacctccaa |
116 |
Q |
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| T |
45102039 |
acgaattgtttggtattttttggggtttgctagtagtctatgtcaagtaacaaacattacatatatacaacaacaaaatggtccatgcataaacctccaa |
45101940 |
T |
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| Q |
117 |
ttatagccttggtattgacatatcgaaaaatagtccaattatagcatggaccgccatgatatactatattgttttggtcgtactatgttccattgaacat |
216 |
Q |
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| T |
45101939 |
ctatagccttggtattgacatattgaaaaatagtccaattatagcatggaccgccatgatatactatattgttttggtcgtactatgttccattgaacat |
45101840 |
T |
|
| Q |
217 |
aaaatcaacttacctttaaaactattttaagttgttacagagtgagtcaagtctagttagctgaattcgtgtgtaagcaaagcaagaacagctgaagttg |
316 |
Q |
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||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| ||||||||||||||||||||||||||| ||||||||| |
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| T |
45101839 |
aaaatcaacttacctttaaaactattttaagttgttatagagtgagtcaagtctagttagctaaattcgtgtgtaagcaaagcaagaacaactgaagttg |
45101740 |
T |
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| Q |
317 |
attaagtcgaatctttctcaattttataaggtcgtaagaatgtcaaaattggtcaaagtcattaacaacatataattgagaatcacgaaagttcatctc |
415 |
Q |
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||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |||||||||||||||| |
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| T |
45101739 |
attaagtcgaatctttctcaattttataaggtcgtaagaatgttaaaattggtcaaagtcattaacaacatataattgagaaccacgaaagttcatctc |
45101641 |
T |
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