View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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	Query
	Query hiting target	Query hiting target's complemental strand
	Query's complemental strand hiting target	Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10821_low_13 (Length: 416)

Name: NF10821_low_13

Description: NF10821

Algorithm: BLASTN 2.2.26 [Sep-21-2011]

Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)

[»] NF10821_low_13

[»] chr6 (3 HSPs)

Target: chr6 (Bit Score: 96; Significance: 6e-47; HSPs: 3)

Name: chr6

Description:

Target: chr6; HSP #1

Raw Score: 96; E-Value: 6e-47

Query Start/End: Original strand, 20 - 115

Target Start/End: Complemental strand, 10102372 - 10102277

Alignment:

Q	20	gttaaggctttgctttcaaattacatccaatttgatgtgcaagggttcttccgacttgccaaaattgataatacactgagaactcaaatgagagca	115	Q
		\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|
T	10102372	gttaaggctttgctttcaaattacatccaatttgatgtgcaagggttcttccgacttgccaaaattgataatacactgagaactcaaatgagagca	10102277	T

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Target: chr6; HSP #2

Raw Score: 32; E-Value: 0.000000009

Query Start/End: Original strand, 353 - 408

Target Start/End: Complemental strand, 10080186 - 10080131

Alignment:

Q	353	aaagaatattttctataacggttgttttccatcttcaacctagtccaatttcattt	408	Q
		\|\|\|\|\|\|\|\|\|\|\|\|\|\| \|\| \|\|\|\|\|\|\|\|\|\|\|\|\| \|\|\|\| \| \|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|
T	10080186	aaagaatattttcttcaatggttgttttccattttcagcttagtccaatttcattt	10080131	T

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Target: chr6; HSP #3

Raw Score: 32; E-Value: 0.000000009

Query Start/End: Original strand, 353 - 408

Target Start/End: Complemental strand, 10096840 - 10096785

Alignment:

Q	353	aaagaatattttctataacggttgttttccatcttcaacctagtccaatttcattt	408	Q
		\|\|\|\|\|\|\|\|\|\|\|\|\|\| \| \|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\| \| \|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|
T	10096840	aaagaatattttcttcgatggttgttttccatcttcagcgtagtccaatttcattt	10096785	T

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