View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10821_low_17 (Length: 380)
Name: NF10821_low_17
Description: NF10821
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10821_low_17 |
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Alignment Details
Target: chr5 (Bit Score: 339; Significance: 0; HSPs: 4)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 339; E-Value: 0
Query Start/End: Original strand, 1 - 367
Target Start/End: Original strand, 40325695 - 40326061
Alignment:
| Q |
1 |
tgaaaattttgtctgtttcgcgtctaccaaagaggcttcagatagacttttgcaggcactacaaagtgataattcatataaaattggattgtatgggaaa |
100 |
Q |
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| T |
40325695 |
tgaaaattttgtgtgtttcgcgtctaccaaagaggcttcagatagacttttgcaggcactgcaaagtgataattcatataaaattggattgtatgggaaa |
40325794 |
T |
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| Q |
101 |
cgcggctctggtaaaacaacattagtgaaagcagtggccgagaaagccaagtactcaaagttttttgatgtagttttatttatcaatgtgtcccaaaacc |
200 |
Q |
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| T |
40325795 |
cgcggctctggtaaaacaacattagtgaaagcagtggctgagaaagccaagtactccaagttttttgatgaagttttatttatcaatgtgtcccaaaacc |
40325894 |
T |
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| Q |
201 |
caaacataaaaaggattcaagatgaaattgctaacgtgttgaatctggaattcgacgtaaatactgaagctggaagaacaagaaaaatatacttgacatt |
300 |
Q |
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| T |
40325895 |
caaacataaaaaggattcaagatgaaattgctaacgagttgaatctggaattcgacgtaaatactgaagctggaagaacaagaaaaatatacttgacatt |
40325994 |
T |
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| Q |
301 |
agcaaatatggatcaccaaattcttgtgatcttggatgatgtttcggaaaatcttgatccagaaaag |
367 |
Q |
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| T |
40325995 |
agcaaatatggatcgccaaattcttgtgatcttggatgatgtttcggaaaatcttgatccagaaaag |
40326061 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 104; E-Value: 9e-52
Query Start/End: Original strand, 4 - 359
Target Start/End: Original strand, 40310418 - 40310773
Alignment:
| Q |
4 |
aaattttgtctgtttcgcgtctaccaaagaggcttcagatagacttttgcaggcactacaaagtgataattcatataaaattggattgtatgggaaacgc |
103 |
Q |
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| T |
40310418 |
aaattttgtatgttttgagcctataaaagagacttcagatagacttttggaggcactagaaaatcgtaagttctataaaattggattgtatggaaagcga |
40310517 |
T |
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| Q |
104 |
ggctctggtaaaacaacattagtgaaagcagtggccgagaaagccaagtactcaaagttttttgatgtagttttatttatcaatgtgtcccaaaacccaa |
203 |
Q |
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| T |
40310518 |
ggctctggtaaaacaaagttggttaaagcagtggctgagaaagccaggtacctgagggtttttgctgcagttttatttatcactgtgtctcaaaatccaa |
40310617 |
T |
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| Q |
204 |
acataaaaaggattcaagatgaaattgctaacgtgttgaatctggaattcgacgtaaatactgaagctggaagaacaagaaaaatatacttgacattagc |
303 |
Q |
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| T |
40310618 |
atgtaaaacagattcaagatgaaatagctgactttttggatctcaaatttgacaaaaacactgaagttggaagagctagagaattatacttgacattaga |
40310717 |
T |
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| Q |
304 |
aaatatggatcaccaaattcttgtgatcttggatgatgtttcggaaaatcttgatc |
359 |
Q |
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| T |
40310718 |
aagcacagatcgtccaattcttgtgatcttggatgatgtttgggaaaatcttgatc |
40310773 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 77 - 168
Target Start/End: Complemental strand, 40257696 - 40257605
Alignment:
| Q |
77 |
tataaaattggattgtatgggaaacgcggctctggtaaaacaacattagtgaaagcagtggccgagaaagccaagtactcaaagttttttga |
168 |
Q |
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| T |
40257696 |
tatataattggattatatgggaagaagggctctggtaaaacaaagttggtgaaagcagttggtgagaaagccaagtatttaaagatttttga |
40257605 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 107 - 204
Target Start/End: Original strand, 40277251 - 40277348
Alignment:
| Q |
107 |
tctggtaaaacaacattagtgaaagcagtggccgagaaagccaagtactcaaagttttttgatgtagttttatttatcaatgtgtcccaaaacccaaa |
204 |
Q |
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| T |
40277251 |
tctggtaaaacagcattggtgaaagcaatgggtgagaaagtcaagtatttaaatatttttcatgaaattttatttgtcagtgtgaccaaaaacccaaa |
40277348 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 318 - 354
Target Start/End: Complemental strand, 26118819 - 26118783
Alignment:
| Q |
318 |
aaattcttgtgatcttggatgatgtttcggaaaatct |
354 |
Q |
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| T |
26118819 |
aaattcttgtgatcttggatgatgtgtgggaaaatct |
26118783 |
T |
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