View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10821_low_18 (Length: 376)
Name: NF10821_low_18
Description: NF10821
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10821_low_18 |
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Alignment Details
Target: chr4 (Bit Score: 233; Significance: 1e-129; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 233; E-Value: 1e-129
Query Start/End: Original strand, 1 - 339
Target Start/End: Original strand, 22475386 - 22475696
Alignment:
| Q |
1 |
atcccctcctcgacatctctgctgtcgtcgatgaagatttcttgaaaaagtacgttgcatcttatcactctttttaaaacttttaatgaaaaacaagaat |
100 |
Q |
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| T |
22475386 |
atcccctcctcgacatctctgctgtcgtcgatgaagatttcttgaaaaagtacgttgcatcttatcactctttttaaaacttttaatgaa---------- |
22475475 |
T |
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| Q |
101 |
caataatggttttgatcatttgtttacaggtttgacatccagttgaacaatgctattctcgctgaagacaaacacaaatctatgtaagttgaacaatgct |
200 |
Q |
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| T |
22475476 |
---ttatggttttgatgatttgtttacaggtttgacatccagttgaacaatgctattctcgctgaagacaaacacaaatctatgtaagttgaacaatgct |
22475572 |
T |
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| Q |
201 |
ttcaataatcttatagttctttaggataatcttcagtttagcttatttatttgagttttaagagtttggtaaacatgctactaattcaggatttgatttt |
300 |
Q |
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| T |
22475573 |
ttcaataatcttatagttctttaggataatcttcagtttagcttatttatttgagttttaaga---------------tgctaattcaggatttgatttt |
22475657 |
T |
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| Q |
301 |
ggtgtaattatcattgattcgaatgaattctttttgtga |
339 |
Q |
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| T |
22475658 |
ggtgtaattatcattgattcgaatgaattctttttgtga |
22475696 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 337 - 365
Target Start/End: Original strand, 22475713 - 22475741
Alignment:
| Q |
337 |
tgaaaagacaagaaattttgtgacttcat |
365 |
Q |
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| T |
22475713 |
tgaaaagacaagaaattttgtgacttcat |
22475741 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 52; Significance: 1e-20; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 1 - 56
Target Start/End: Complemental strand, 28171023 - 28170968
Alignment:
| Q |
1 |
atcccctcctcgacatctctgctgtcgtcgatgaagatttcttgaaaaagtacgtt |
56 |
Q |
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| T |
28171023 |
atccccttctcgacatctctgctgtcgtcgatgaagatttcttgaaaaagtacgtt |
28170968 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 123 - 188
Target Start/End: Complemental strand, 28170878 - 28170813
Alignment:
| Q |
123 |
tttacaggtttgacatccagttgaacaatgctattctcgctgaagacaaacacaaatctatgtaag |
188 |
Q |
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| T |
28170878 |
tttacaggtttgatatccagttgaacaatgccattctcgctgaagataagcacaaatctatgtaag |
28170813 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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