View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10821_low_2 (Length: 519)
Name: NF10821_low_2
Description: NF10821
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10821_low_2 |
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| [»] chr2 (1 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 346; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 346; E-Value: 0
Query Start/End: Original strand, 18 - 519
Target Start/End: Original strand, 7949248 - 7949758
Alignment:
| Q |
18 |
ggagagacggtttcaaatgcgggggttggaacttgtaagtgtcttggcatggttgtcactttattttgtaaaataannnnnnnnnnn--------ataat |
109 |
Q |
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| T |
7949248 |
ggagagacggcttcaaatgtgggggttggaacttgtaagtgtcttggcatggttgtcactttattttgtataataatttattttattttatttttataac |
7949347 |
T |
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| Q |
110 |
tgacgagccta-aggcgacatctataatatataaatgaaaaagtgtaacacaaaagagaggg-ggcaaaaccaaaccatcaaaggaacattaacaaaatc |
207 |
Q |
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| T |
7949348 |
tgatgagccttgaggcgacatctataatatataaatgaaaaattgtaatacaaaagagagggtggcaaaaccaaaccctcaaaggaacattaacaaaatc |
7949447 |
T |
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| Q |
208 |
gaaagttgggaagacctagcttgttcctacctaggtcccctctaattacaattgaaggaaaggaccaccaagtgaaatcaacaatagataagcctaagtt |
307 |
Q |
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| T |
7949448 |
gaaagttgggaagacctagcttattcctacctaggtcccctctaattataattggaggaaaggaccac-aagtgaaatcagcaatagataagcctaagtt |
7949546 |
T |
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| Q |
308 |
tgcaagtttgtcagcacagtgatttccttctctgtaaatatgagacaggatgaattgcatagattgaagctttccaacacagttgttccatctattcttt |
407 |
Q |
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| T |
7949547 |
tgcaagtttgtcagcacgatgattttcttctctgtaaatatgagacaagatgaattgcatagattgaagctttccaacacagttgttccatctattcttt |
7949646 |
T |
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| Q |
408 |
aatttccaaggaactatagagggtgacttgatggccaaggtagctatcttggagtcagtctctatccaaaggtgatgccagtttttatcaaaagcaattt |
507 |
Q |
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| T |
7949647 |
aatttccaaggaactatagagggtgacttgatggccaacgtagctatcttggagtcagtctctatccaaaggtgatgccattttttatcaaaaacaattt |
7949746 |
T |
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| Q |
508 |
caacagccataa |
519 |
Q |
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| T |
7949747 |
caacagccataa |
7949758 |
T |
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