View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF10821_low_23 (Length: 344)
Name: NF10821_low_23
Description: NF10821
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10821_low_23 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 229; Significance: 1e-126; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 229; E-Value: 1e-126
Query Start/End: Original strand, 1 - 313
Target Start/End: Complemental strand, 21779381 - 21779070
Alignment:
| Q |
1 |
aaggacagagaaagaatattgaaccttatccacaatgccacccaatattattannnnnnnnnnnnnnnnnnaacaacaagaataaagaaaagcttcatat |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |
|
|
| T |
21779381 |
aaggacagagaaagaatattgaaccttatccacaatgccacccaatattattattttttcttcttttttt-aacaacaagaataaagaaaagcttcatat |
21779283 |
T |
|
| Q |
101 |
gaagctctttataaaagcaagacaaaggcatgtcattgtggaaccaccattaacaacgtaggagaaagaaaaaataaaccattgatcatatgcaactaaa |
200 |
Q |
| |
|
||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
21779282 |
gaagctctttataaaagcatgacaaaggcatgtcattgtggaaccaccattaacaacgtaggagaaagaaaaaataaaccattgatcatatgcaactaaa |
21779183 |
T |
|
| Q |
201 |
cacacacatatactatatatattagtgatnnnnnnncattgtattttaacttccaaaaccaacatggcaaacaataagggttactttgcaagaagaaacc |
300 |
Q |
| |
|
||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
21779182 |
cacacacatatactatatatattagtgataaaaaaacattgtattttaacttccaaaaccaacatggcaaacaataagggttactttgcaagaagaaacc |
21779083 |
T |
|
| Q |
301 |
acctctttctttc |
313 |
Q |
| |
|
||||||||||||| |
|
|
| T |
21779082 |
acctctttctttc |
21779070 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University