View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF10821_low_25 (Length: 329)
Name: NF10821_low_25
Description: NF10821
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10821_low_25 |
 | |
|
| [»] scaffold1315 (1 HSPs) |
| | |
|
| [»] scaffold1293 (1 HSPs) |
| | |
|
Alignment Details
Target: chr8 (Bit Score: 214; Significance: 1e-117; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 214; E-Value: 1e-117
Query Start/End: Original strand, 70 - 313
Target Start/End: Original strand, 43439377 - 43439617
Alignment:
| Q |
70 |
atagcaaacaagttttaacttaaacttatcatttacaggagatctctccgtaaattgattctccgcccattctattgccatgtgcaaaatcaggagcttg |
169 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |
|
|
| T |
43439377 |
atagcaaacaagttttaacttaaacttatcatttacaggagatctctccgtaaattgattctccgcccattctatcgccatgtgcaaaatcaggagcttg |
43439476 |
T |
|
| Q |
170 |
gtaaaatcctatggaatgagctacccttgtaagaaagcaccatttttaaagcaagcaaataaaaccagcattgtgtaattggtgtgtaaatacgtgaaga |
269 |
Q |
| |
|
| |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
|
|
| T |
43439477 |
g---aatcctatggaatgagctacccctgtaagaaagcaccatttttaaagcaagcaaataaaaccagcattgtgtaattggtgtgtaaatacttgaaga |
43439573 |
T |
|
| Q |
270 |
aggttataatatcattgagttagtgttgttcatagagttgtaaa |
313 |
Q |
| |
|
|||||||| ||||||||||||||||||||||||||||||||||| |
|
|
| T |
43439574 |
aggttatagtatcattgagttagtgttgttcatagagttgtaaa |
43439617 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold1315 (Bit Score: 59; Significance: 6e-25; HSPs: 1)
Name: scaffold1315
Description:
Target: scaffold1315; HSP #1
Raw Score: 59; E-Value: 6e-25
Query Start/End: Original strand, 1 - 67
Target Start/End: Complemental strand, 1062 - 996
Alignment:
| Q |
1 |
taaggagagtgtgttttataattgacaatataattaatagaatgagttgctgataatttatgatttt |
67 |
Q |
| |
|
||||||||||||||||||| ||||||||||||||||||| ||||||||||||||||||||||||||| |
|
|
| T |
1062 |
taaggagagtgtgttttatcattgacaatataattaataaaatgagttgctgataatttatgatttt |
996 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 59; Significance: 6e-25; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 59; E-Value: 6e-25
Query Start/End: Original strand, 1 - 67
Target Start/End: Original strand, 42757114 - 42757180
Alignment:
| Q |
1 |
taaggagagtgtgttttataattgacaatataattaatagaatgagttgctgataatttatgatttt |
67 |
Q |
| |
|
|||| |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
42757114 |
taagaagagtgtgttttatcattgacaatataattaatagaatgagttgctgataatttatgatttt |
42757180 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold1293 (Bit Score: 55; Significance: 1e-22; HSPs: 1)
Name: scaffold1293
Description:
Target: scaffold1293; HSP #1
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 1 - 67
Target Start/End: Original strand, 1009 - 1075
Alignment:
| Q |
1 |
taaggagagtgtgttttataattgacaatataattaatagaatgagttgctgataatttatgatttt |
67 |
Q |
| |
|
|||| |||||||||||||| ||||||||||||||||||| ||||||||||||||||||||||||||| |
|
|
| T |
1009 |
taagaagagtgtgttttatcattgacaatataattaataaaatgagttgctgataatttatgatttt |
1075 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 47; Significance: 8e-18; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 1 - 63
Target Start/End: Complemental strand, 6466708 - 6466646
Alignment:
| Q |
1 |
taaggagagtgtgttttataattgacaatataattaatagaatgagttgctgataatttatga |
63 |
Q |
| |
|
||||||| |||||||||||| |||||||||||||||||||||||||||| |||||||||||| |
|
|
| T |
6466708 |
taaggagggtgtgttttatatgtgacaatataattaatagaatgagttgcagataatttatga |
6466646 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 42; Significance: 0.000000000000008; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 112 - 161
Target Start/End: Original strand, 25642653 - 25642702
Alignment:
| Q |
112 |
tctctccgtaaattgattctccgcccattctattgccatgtgcaaaatca |
161 |
Q |
| |
|
|||||||||||||||||||||||||||||| ||||||||||| ||||||| |
|
|
| T |
25642653 |
tctctccgtaaattgattctccgcccattccattgccatgtgtaaaatca |
25642702 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University