View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF10821_low_26 (Length: 328)
Name: NF10821_low_26
Description: NF10821
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10821_low_26 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 282; Significance: 1e-158; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 282; E-Value: 1e-158
Query Start/End: Original strand, 1 - 310
Target Start/End: Complemental strand, 49694266 - 49693957
Alignment:
| Q |
1 |
gctttccttttcagcaaagacctacaacgaaaaccggtccaaaccgggttatttaaaccggtatcatcagaccgaaaaagacccatgtttcccaacatcg |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
49694266 |
gctttccttttcagcaaagacctacaacgaaaagcggtccaaaccgggttatttaaaccggtatcatcagaccgaaaaagacccatgtttcccaacatcg |
49694167 |
T |
|
| Q |
101 |
gagaactagcatgtccttcttcatcttcctctctcgatggcgacgacacaaacagatccttgagtgagcttctccgcatcgaatctttctccttcttctc |
200 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| | |||||||||||||||||||||||| ||||||||||| |
|
|
| T |
49694166 |
gagaactagcatgtccttcttcatcttcctctctcgatggcgaggacacaaacagatccttcaatgagcttctccgcatcgaatctttatccttcttctc |
49694067 |
T |
|
| Q |
201 |
taacaccgatacgtgtccctgccttcgttgcggtcgcgtcaggcttagcccaagtagagtacggagtgttgttttgggccttggaagctgaatcagcggg |
300 |
Q |
| |
|
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
49694066 |
caacaccgacacgtgtccctgccttcgttgcggtcgcgtcaggcttagcccaagtagagtacggagtgttgttttgggccttggaagctgaatcagcggg |
49693967 |
T |
|
| Q |
301 |
cttgttcttg |
310 |
Q |
| |
|
|||||||||| |
|
|
| T |
49693966 |
cttgttcttg |
49693957 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University