View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10821_low_29 (Length: 313)
Name: NF10821_low_29
Description: NF10821
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10821_low_29 |
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Alignment Details
Target: chr5 (Bit Score: 124; Significance: 9e-64; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 124; E-Value: 9e-64
Query Start/End: Original strand, 177 - 311
Target Start/End: Original strand, 4287222 - 4287357
Alignment:
| Q |
177 |
tttactgtcttagaaactaatttcgaatcatcccttaatatgaattgcaattt-gtaatcagtttaatctatcattttatacactttcaatctatcttgc |
275 |
Q |
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| T |
4287222 |
tttactgtcttcgaaactaatttcgaatcatcccttaatatgaattgcaattttgtaatcagtttaatctatcattttatacactttcaatctatcttgc |
4287321 |
T |
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| Q |
276 |
agttgctaaaaggtgatcctttttaaaggttctgtg |
311 |
Q |
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| T |
4287322 |
agttgctaaaaggtgatcctttttaaaggttctgtg |
4287357 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 62; E-Value: 9e-27
Query Start/End: Original strand, 19 - 105
Target Start/End: Original strand, 4287055 - 4287137
Alignment:
| Q |
19 |
atccaggtcagagtgatagatttgatcattagagcatcaagatgcatgacatatttcaaatcaacaataactaatagatatcagagc |
105 |
Q |
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| T |
4287055 |
atccagttcagagtgatagatttgatcattagagcatcaag----atgacatatttcaaatcaacactaactaatagatatcagagc |
4287137 |
T |
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