View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10821_low_32 (Length: 301)
Name: NF10821_low_32
Description: NF10821
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10821_low_32 |
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Alignment Details
Target: chr8 (Bit Score: 249; Significance: 1e-138; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 249; E-Value: 1e-138
Query Start/End: Original strand, 11 - 284
Target Start/End: Original strand, 4903329 - 4903604
Alignment:
| Q |
11 |
tgaatgggtttgtcttgggcgaggagggggatgattggatttggaggttggaagaggaaggtgctttttcggtaaaatcaatgtattctaaattggaaac |
110 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4903329 |
tgaatgggtttgtcttgggcgaggagggggatgattggatttggaggttggatgaggaaggtgctttttcggtaaaatcaatgtattctaaattggaaac |
4903428 |
T |
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| Q |
111 |
attgatgataagggaggaaggtcttgatggtctcccgaggagggttttctcgcatatttggaagagcccgg--ccgtcgaaagtggtggtttttacttgg |
208 |
Q |
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|||||||||||||||||||| |||||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |
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| T |
4903429 |
attgatgataagggaggaagatcttgatggtctcccgaggaaggttttctcgcatatttggaagagcccggcaccgtcgaaagtggtggtttttacttgg |
4903528 |
T |
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| Q |
209 |
aaacttcttcatgatagaatcccaacaaagatcaaccttgctataagaaactcgctcccaccggatagctctctac |
284 |
Q |
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||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4903529 |
aaacttcttcacgatagaatcccaacaaagatcaaccttgctataagaaactcgctcccaccggatagctctctac |
4903604 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 34 - 111
Target Start/End: Original strand, 1556828 - 1556905
Alignment:
| Q |
34 |
gagggggatgattggatttggaggttggaagaggaaggtgctttttcggtaaaatcaatgtattctaaattggaaaca |
111 |
Q |
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|||| |||| |||||| ||||||||||| ||||| || ||||| ||||| |||||||||||||| |||||||||||| |
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| T |
1556828 |
gaggaggatcattggaagtggaggttggaggaggacggagctttctcggtcaaatcaatgtattcaaaattggaaaca |
1556905 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 191 - 258
Target Start/End: Original strand, 1556987 - 1557054
Alignment:
| Q |
191 |
gtggtggtttttacttggaaacttcttcatgatagaatcccaacaaagatcaaccttgctataagaaa |
258 |
Q |
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| T |
1556987 |
gtggtggttttttcttggaaacttctccacgatagaattcctacaaagaccaaccttgcaattagaaa |
1557054 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 139; Significance: 9e-73; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 139; E-Value: 9e-73
Query Start/End: Original strand, 11 - 282
Target Start/End: Complemental strand, 22154207 - 22153955
Alignment:
| Q |
11 |
tgaatgggtttgtcttgggcgaggagggggatgattggatttggaggttggaagaggaaggtgctttttcggtaaaatcaatgtattctaaattggaaac |
110 |
Q |
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||||||||||||| |||||||||||||||||||||||||||||||||||||| |||||||||||||| || |||||| ||| ||||||||||||||||| |
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| T |
22154207 |
tgaatgggtttgtgttgggcgaggagggggatgattggatttggaggttggatgaggaaggtgctttgtcaataaaataaatttattctaaattggaaac |
22154108 |
T |
|
| Q |
111 |
attgatgataagggaggaaggtcttgatggtctcccgaggagggttttctcgcatatttggaagagcccgg--ccgtcgaaagtggtggtttttacttgg |
208 |
Q |
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|||||||||||||||||| ||||||||||||||||||| || |||||| |||||||||||||||||||||| |||||| ||||| ||||||| |
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| T |
22154107 |
attgatgataagggaggatggtcttgatggtctcccgacgaaggttttttcgcatatttggaagagcccggcaccgtcggaagtgatggtttt------- |
22154015 |
T |
|
| Q |
209 |
aaacttcttcatgatagaatcccaacaaagatcaaccttgctataagaaactcgctcccaccggatagctctct |
282 |
Q |
| |
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||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
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| T |
22154014 |
--------------tagaatcccaacaaagatcaaccttgctataaggaactcgctcccaccggatagctctct |
22153955 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 139; E-Value: 9e-73
Query Start/End: Original strand, 11 - 282
Target Start/End: Complemental strand, 22210122 - 22209870
Alignment:
| Q |
11 |
tgaatgggtttgtcttgggcgaggagggggatgattggatttggaggttggaagaggaaggtgctttttcggtaaaatcaatgtattctaaattggaaac |
110 |
Q |
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||||||||||||| |||||||||||||||||||||||||||||||||||||| |||||||||||||| || |||||| ||| ||||||||||||||||| |
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| T |
22210122 |
tgaatgggtttgtgttgggcgaggagggggatgattggatttggaggttggatgaggaaggtgctttgtcaataaaataaatttattctaaattggaaac |
22210023 |
T |
|
| Q |
111 |
attgatgataagggaggaaggtcttgatggtctcccgaggagggttttctcgcatatttggaagagcccgg--ccgtcgaaagtggtggtttttacttgg |
208 |
Q |
| |
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|||||||||||||||||| ||||||||||||||||||| || |||||| |||||||||||||||||||||| |||||| ||||| ||||||| |
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| T |
22210022 |
attgatgataagggaggatggtcttgatggtctcccgacgaaggttttttcgcatatttggaagagcccggcaccgtcggaagtgatggtttt------- |
22209930 |
T |
|
| Q |
209 |
aaacttcttcatgatagaatcccaacaaagatcaaccttgctataagaaactcgctcccaccggatagctctct |
282 |
Q |
| |
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||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
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| T |
22209929 |
--------------tagaatcccaacaaagatcaaccttgctataaggaactcgctcccaccggatagctctct |
22209870 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 52; Significance: 8e-21; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 52; E-Value: 8e-21
Query Start/End: Original strand, 52 - 252
Target Start/End: Complemental strand, 34821847 - 34821645
Alignment:
| Q |
52 |
tggaggttggaagaggaaggtgctttttcggtaaaatcaatgtattctaaattggaaacattgatgataagggaggaaggtcttgatggtctcccgagga |
151 |
Q |
| |
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||||||||||| ||||| || || ||||||||||||||||||||||||| |||||||||||||||| | || || |||| | | | ||||| |
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| T |
34821847 |
tggaggttggaggaggatggggccttttcggtaaaatcaatgtattctagattggaaacattgatggtgccggttgacaatcttcaagatggggagagga |
34821748 |
T |
|
| Q |
152 |
gggttttctcgcatatttggaagagcccggc--cgtcgaaagtggtggtttttacttggaaacttcttcatgatagaatcccaacaaagatcaaccttgc |
249 |
Q |
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|||| || |||| ||| ||||||| |||| | || |||||||| || ||| |||||||||||||||||||||||||||||||||| ||||||||||| |
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| T |
34821747 |
gggtgtttgcgcaaattcggaagagttcggctccatctaaagtggtcgtctttgcttggaaacttcttcatgatagaatcccaacaaaaatcaaccttgc |
34821648 |
T |
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| Q |
250 |
tat |
252 |
Q |
| |
|
||| |
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| T |
34821647 |
tat |
34821645 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 51 - 182
Target Start/End: Original strand, 53561813 - 53561944
Alignment:
| Q |
51 |
ttggaggttggaagaggaaggtgctttttcggtaaaatcaatgtattctaaattggaaacattgatgataagggaggaaggtcttgatggtctcccgagg |
150 |
Q |
| |
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|||||| ||||||||||| ||| |||||||||| ||||| |||||||| |||||||||||||||||| | ||||| || | ||||||| || |||| |
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| T |
53561813 |
ttggagtttggaagaggacggtactttttcggttaaatctatgtattccaaattggaaacattgatggtgagggaagagagccttgatgaactagagagg |
53561912 |
T |
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| Q |
151 |
agggttttctcgcatatttggaagagcccggc |
182 |
Q |
| |
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||||| || ||||||||||||||| ||||| |
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| T |
53561913 |
agggtgtttaagcatatttggaagagtccggc |
53561944 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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