View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF10821_low_40 (Length: 262)
Name: NF10821_low_40
Description: NF10821
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10821_low_40 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 215; Significance: 1e-118; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 215; E-Value: 1e-118
Query Start/End: Original strand, 11 - 246
Target Start/End: Original strand, 15020614 - 15020851
Alignment:
| Q |
11 |
cagagagcaacgacatg--cgtaaccacattaggacgacaactacatccacacatttgccgaaacacatccattgcttcacaaccaaaccctctctgagc |
108 |
Q |
| |
|
|||| |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
15020614 |
cagaaagcaacgacatgagcgtaaccacattaggacgacaactacatccacacatttgccgaaacacatccattgcttcacaaccaaaccctctctgagc |
15020713 |
T |
|
| Q |
109 |
atacccagaaataacagaactccaagtaacaacatccaactcaattttctcttccctcattttcccaaacaaagaaagagcatcctcaaatctaccattt |
208 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
|
|
| T |
15020714 |
atacccagaaataacagaactccaagtaacaacatccaactcaattctctcttccctcattttcccaaacaaagaaagtgcatcctcaaatctaccattt |
15020813 |
T |
|
| Q |
209 |
tgagaatacccggtaaccatagcattccaagtaacaac |
246 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||| |
|
|
| T |
15020814 |
tgagaatacccggtaaccatagcattccaagtaacaac |
15020851 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 215; E-Value: 1e-118
Query Start/End: Original strand, 11 - 246
Target Start/End: Original strand, 15027732 - 15027969
Alignment:
| Q |
11 |
cagagagcaacgacatg--cgtaaccacattaggacgacaactacatccacacatttgccgaaacacatccattgcttcacaaccaaaccctctctgagc |
108 |
Q |
| |
|
|||| |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
15027732 |
cagaaagcaacgacatgagcgtaaccacattaggacgacaactacatccacacatttgccgaaacacatccattgcttcacaaccaaaccctctctgagc |
15027831 |
T |
|
| Q |
109 |
atacccagaaataacagaactccaagtaacaacatccaactcaattttctcttccctcattttcccaaacaaagaaagagcatcctcaaatctaccattt |
208 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
|
|
| T |
15027832 |
atacccagaaataacagaactccaagtaacaacatccaactcaattctctcttccctcattttcccaaacaaagaaagtgcatcctcaaatctaccattt |
15027931 |
T |
|
| Q |
209 |
tgagaatacccggtaaccatagcattccaagtaacaac |
246 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||| |
|
|
| T |
15027932 |
tgagaatacccggtaaccatagcattccaagtaacaac |
15027969 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 210; E-Value: 1e-115
Query Start/End: Original strand, 8 - 246
Target Start/End: Original strand, 15045854 - 15046094
Alignment:
| Q |
8 |
aagcagagagcaacgacatg--cgtaaccacattaggacgacaactacatccacacatttgccgaaacacatccattgcttcacaaccaaaccctctctg |
105 |
Q |
| |
|
||||||| |||||||||||| ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
|
|
| T |
15045854 |
aagcagaaagcaacgacatgagcgtaaccacattaggacgacaacgacatccacacatttgccgaaacacatccattgcttcacaaccaaaccccctctg |
15045953 |
T |
|
| Q |
106 |
agcatacccagaaataacagaactccaagtaacaacatccaactcaattttctcttccctcattttcccaaacaaagaaagagcatcctcaaatctacca |
205 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
15045954 |
agcatacccagaaataacagaactccaagtaacaacatccgactcaattttctcttccctcattttcccaaacaaagaaagagcatcctcaaatctacca |
15046053 |
T |
|
| Q |
206 |
ttttgagaatacccggtaaccatagcattccaagtaacaac |
246 |
Q |
| |
|
||||||||||||||||||||||| ||||||||||||||||| |
|
|
| T |
15046054 |
ttttgagaatacccggtaaccatggcattccaagtaacaac |
15046094 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 202; E-Value: 1e-110
Query Start/End: Original strand, 8 - 246
Target Start/End: Original strand, 15006494 - 15006734
Alignment:
| Q |
8 |
aagcagagagcaacgacatgcg--taaccacattaggacgacaactacatccacacatttgccgaaacacatccattgcttcacaaccaaaccctctctg |
105 |
Q |
| |
|
||||||| ||||| |||||| | ||||||||||||||||||||| |||||||||||||| |||||||||||||||||||||||||||||| |||||||| |
|
|
| T |
15006494 |
aagcagaaagcaaagacatgagcttaaccacattaggacgacaacgacatccacacattttccgaaacacatccattgcttcacaaccaaatcctctctg |
15006593 |
T |
|
| Q |
106 |
agcatacccagaaataacagaactccaagtaacaacatccaactcaattttctcttccctcattttcccaaacaaagaaagagcatcctcaaatctacca |
205 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
15006594 |
agcatacccagaaataacagaactccaagtaacaacatccaactcaattatctcttccctcattttcccaaacaaagaaagagcatcctcaaatctacca |
15006693 |
T |
|
| Q |
206 |
ttttgagaatacccggtaaccatagcattccaagtaacaac |
246 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
15006694 |
ttttgagaatacccggtaaccatagcattccaagtaacaac |
15006734 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University