View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10821_low_42 (Length: 257)
Name: NF10821_low_42
Description: NF10821
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10821_low_42 |
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Alignment Details
Target: chr5 (Bit Score: 77; Significance: 8e-36; HSPs: 6)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 77; E-Value: 8e-36
Query Start/End: Original strand, 7 - 128
Target Start/End: Original strand, 10140966 - 10141091
Alignment:
| Q |
7 |
aagcagagatggtatattttcataaactaaaaatatttttaaacttatnnnnnnnn----ctaaatagataaacatagagttcaaatcctctctcctacg |
102 |
Q |
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| T |
10140966 |
aagcaaagatggtatattttcataaactaaaaatatatttaaacttataaaaaaaaaaaactaaatagataaacatagagttcaaatcctctctcctacg |
10141065 |
T |
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| Q |
103 |
attgaaaatgatgattagtgtatttg |
128 |
Q |
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| T |
10141066 |
attgaaaatgatgattagtgtatttg |
10141091 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 194 - 257
Target Start/End: Original strand, 10141156 - 10141219
Alignment:
| Q |
194 |
catacctctgataaggtgtagcattcagttgagagcagaaatcatgcatggcttgtgaagaacc |
257 |
Q |
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|||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
10141156 |
catacctctggtaaggtgtagcattcagttgagagcagaaatcatgcatggcttgtgaagaacc |
10141219 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 194 - 257
Target Start/End: Original strand, 10089520 - 10089583
Alignment:
| Q |
194 |
catacctctgataaggtgtagcattcagttgagagcagaaatcatgcatggcttgtgaagaacc |
257 |
Q |
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|||||||||||| |||||||||||||| ||||||||||||||| || || ||||| |||||||| |
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| T |
10089520 |
catacctctgatgaggtgtagcattcaattgagagcagaaatcttgtatagcttgcgaagaacc |
10089583 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 194 - 257
Target Start/End: Complemental strand, 11301222 - 11301159
Alignment:
| Q |
194 |
catacctctgataaggtgtagcattcagttgagagcagaaatcatgcatggcttgtgaagaacc |
257 |
Q |
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|||||||||||| |||||||||||||| |||||||||||||| || || |||||||||||||| |
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| T |
11301222 |
catacctctgatgaggtgtagcattcaattgagagcagaaatattgtatagcttgtgaagaacc |
11301159 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 194 - 253
Target Start/End: Original strand, 10146168 - 10146227
Alignment:
| Q |
194 |
catacctctgataaggtgtagcattcagttgagagcagaaatcatgcatggcttgtgaag |
253 |
Q |
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|||||||||| | |||||| |||||||||||||||||||||||||||| |||| ||||| |
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| T |
10146168 |
catacctctggtgaggtgtgacattcagttgagagcagaaatcatgcatagcttatgaag |
10146227 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #6
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 197 - 257
Target Start/End: Original strand, 10152780 - 10152840
Alignment:
| Q |
197 |
acctctgataaggtgtagcattcagttgagagcagaaatcatgcatggcttgtgaagaacc |
257 |
Q |
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|||| |||| |||||| ||||||| |||||||||||| ||||||| |||||||||||||| |
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| T |
10152780 |
acctttgatgaggtgtggcattcaattgagagcagaattcatgcacagcttgtgaagaacc |
10152840 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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