View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10821_low_43 (Length: 253)
Name: NF10821_low_43
Description: NF10821
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10821_low_43 |
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Alignment Details
Target: chr5 (Bit Score: 179; Significance: 1e-96; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 179; E-Value: 1e-96
Query Start/End: Original strand, 43 - 236
Target Start/End: Original strand, 40882819 - 40883013
Alignment:
| Q |
43 |
cttacaatctctatgcgatgaactatata-tctctgaccttatatcttccaacacatctttttcactacgactatgctaaatttctactaaatcttcatt |
141 |
Q |
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| T |
40882819 |
cttacaatctctatgcgatgaactatttaatctctgaccttatatcttccaacacatctttttcactacgactatgctaaatttctactaaatcttcatt |
40882918 |
T |
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| Q |
142 |
taattatggttcatgcatccaaacaaaagtacaaaacacaatctgtcaaatagaagaagttaaaagcaagttaaagagtgtttgagatttgcgaa |
236 |
Q |
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| T |
40882919 |
taattatggttcatgcatccaaacaaaagtacaaaacacaatctgtcaaatagaagaagttaaaagcaagttaaagagtgcttgagatttgcgaa |
40883013 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 170; Significance: 2e-91; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 170; E-Value: 2e-91
Query Start/End: Original strand, 44 - 236
Target Start/End: Complemental strand, 8909182 - 8908989
Alignment:
| Q |
44 |
ttacaatctctatgcgatgaactatata-tctctgaccttatatcttccaacacatctttttcactacgactatgctaaatttctactaaatcttcattt |
142 |
Q |
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|||||||||||||| ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
8909182 |
ttacaatctctatgtgatgaactatataatctctgaccttatatcttccaacacatctttttcactacgactatgctaaatttctactaaatcttcattt |
8909083 |
T |
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| Q |
143 |
aattatggttcatgcatccaaacaaaagtacaaaacacaatctgtcaaatagaagaagttaaaagcaagttaaagagtgtttgagatttgcgaa |
236 |
Q |
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|||||||||| | ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
8909082 |
aattatggttaaagcatcgaaacaaaagtacaaaacacaatctgtcaaatagaagaagttaaaagcaagttaaagagtgtttgagatttgcgaa |
8908989 |
T |
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