View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10821_low_45 (Length: 251)

Name: NF10821_low_45
Description: NF10821
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10821_low_45
NF10821_low_45
[»] scaffold0332 (2 HSPs)
scaffold0332 (71-209)||(4494-4634)
scaffold0332 (14-58)||(4679-4723)
[»] chr5 (7 HSPs)
chr5 (71-209)||(43100860-43101000)
chr5 (71-142)||(9622365-9622436)
chr5 (155-209)||(9622292-9622346)
chr5 (208-244)||(39690594-39690630)
chr5 (164-209)||(5423074-5423119)
chr5 (159-208)||(19279554-19279603)
chr5 (159-208)||(35377871-35377920)
[»] chr6 (7 HSPs)
chr6 (157-209)||(20969686-20969738)
chr6 (159-209)||(6837882-6837932)
chr6 (159-209)||(2912805-2912855)
chr6 (159-209)||(13756509-13756560)
chr6 (71-140)||(2912719-2912788)
chr6 (159-208)||(15134959-15135008)
chr6 (208-244)||(19838891-19838927)
[»] scaffold0127 (1 HSPs)
scaffold0127 (159-209)||(22834-22884)
[»] chr8 (3 HSPs)
chr8 (71-207)||(8845596-8845736)
chr8 (157-205)||(23629555-23629603)
chr8 (159-209)||(7186311-7186361)
[»] chr7 (11 HSPs)
chr7 (159-209)||(25734594-25734644)
chr7 (159-208)||(12287203-12287252)
chr7 (160-205)||(29235595-29235640)
chr7 (172-208)||(16706591-16706627)
chr7 (172-208)||(17680827-17680863)
chr7 (159-207)||(25742690-25742738)
chr7 (71-125)||(16706674-16706727)
chr7 (71-125)||(17680910-17680963)
chr7 (72-142)||(35015878-35015948)
chr7 (159-208)||(1911088-1911137)
chr7 (159-208)||(26576068-26576117)
[»] chr3 (5 HSPs)
chr3 (71-209)||(37333213-37333345)
chr3 (159-209)||(1102928-1102978)
chr3 (71-128)||(1102827-1102884)
chr3 (172-209)||(20826319-20826356)
chr3 (160-209)||(46909881-46909930)
[»] chr4 (10 HSPs)
chr4 (159-209)||(43334654-43334704)
chr4 (159-206)||(37182543-37182590)
chr4 (155-201)||(19477569-19477615)
chr4 (99-141)||(43334580-43334622)
chr4 (208-244)||(7002142-7002178)
chr4 (72-142)||(37182617-37182687)
chr4 (159-208)||(16529955-16530004)
chr4 (159-208)||(44516002-44516051)
chr4 (208-244)||(12624656-12624692)
chr4 (159-207)||(17999032-17999080)
[»] chr1 (7 HSPs)
chr1 (155-209)||(51776664-51776718)
chr1 (158-209)||(42693417-42693468)
chr1 (72-142)||(42693489-42693559)
chr1 (158-208)||(43728557-43728607)
chr1 (208-244)||(15512889-15512925)
chr1 (208-244)||(28949072-28949108)
chr1 (208-244)||(4813570-4813606)
[»] chr2 (5 HSPs)
chr2 (159-208)||(25322933-25322982)
chr2 (208-244)||(17663584-17663620)
chr2 (163-208)||(7315283-7315328)
chr2 (73-142)||(7315347-7315416)
chr2 (159-207)||(20638559-20638607)
[»] scaffold0355 (1 HSPs)
scaffold0355 (159-208)||(2702-2750)


Alignment Details
Target: scaffold0332 (Bit Score: 70; Significance: 1e-31; HSPs: 2)
Name: scaffold0332
Description:

Target: scaffold0332; HSP #1
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 71 - 209
Target Start/End: Complemental strand, 4634 - 4494
Alignment:
Q  71 cattaaataggcaccctcattcttgagtataacatatgggtgcttgtagaggagggtgactatggaagcacc--nnnnnnnnnnnntcaattttcatgga 168  Q
    ||||||||| ||||| |||||||| ||||||||||||||||||||||||||||||| | |||||||||||||              ||||||||||||||    
T  4634 cattaaataagcaccttcattcttaagtataacatatgggtgcttgtagaggagggcggctatggaagcaccctctctctctctcttcaattttcatgga 4535  T
Q  169 tcccatttaataaaacttagtaaaatgaataaattttgtta 209  Q
    ||||||||||||||||||| |||||||||||||||||||||    
T  4534 tcccatttaataaaacttaataaaatgaataaattttgtta 4494  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0332; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 14 - 58
Target Start/End: Complemental strand, 4723 - 4679
Alignment:
Q  14 cttgaaacatgtaacaaattaattttaatgatgtattaacgttga 58  Q
    |||| |||||||||||||||||||||||||| ||||| |||||||    
T  4723 cttggaacatgtaacaaattaattttaatgacgtattgacgttga 4679  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 50; Significance: 1e-19; HSPs: 7)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 71 - 209
Target Start/End: Complemental strand, 43101000 - 43100860
Alignment:
Q  71 cattaaataggcaccctcattcttgagtataacatatgggtgcttgtagaggagggtgactatggaagcaccnnnnnnnnnnnn--tcaattttcatgga 168  Q
    ||||||||| ||||||||||| | ||||||||||||||||||||| | ||| ||| || |||||||||||||              |||||||||||||     
T  43101000 cattaaataagcaccctcattgtggagtataacatatgggtgcttatggagtaggttggctatggaagcaccctccctcccactcttcaattttcatggg 43100901  T
Q  169 tcccatttaataaaacttagtaaaatgaataaattttgtta 209  Q
    |||||||||||||| ||| ||||||||||||||||||||||    
T  43100900 tcccatttaataaatctttgtaaaatgaataaattttgtta 43100860  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 71 - 142
Target Start/End: Complemental strand, 9622436 - 9622365
Alignment:
Q  71 cattaaataggcaccctcattcttgagtataacatatgggtgcttgtagaggagggtgactatggaagcacc 142  Q
    |||||||||| ||||| |||| | |||||||||||||| |||||| | || |||||||||||||||||||||    
T  9622436 cattaaatagacacccccattgtggagtataacatatgagtgcttatggaagagggtgactatggaagcacc 9622365  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 155 - 209
Target Start/End: Complemental strand, 9622346 - 9622292
Alignment:
Q  155 tcaattttcatggatcccatttaataaaacttagtaaaatgaataaattttgtta 209  Q
    ||||||||||||  ||| |||||||||| |||||||||||||||||| |||||||    
T  9622346 tcaattttcatgagtcctatttaataaatcttagtaaaatgaataaactttgtta 9622292  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 208 - 244
Target Start/End: Complemental strand, 39690630 - 39690594
Alignment:
Q  208 tactccctccgtccctatatataacccccctttgctt 244  Q
    |||||||||||||||||||| ||||||||||||||||    
T  39690630 tactccctccgtccctatatgtaacccccctttgctt 39690594  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 164 - 209
Target Start/End: Complemental strand, 5423119 - 5423074
Alignment:
Q  164 atggatcccatttaataaaacttagtaaaatgaataaattttgtta 209  Q
    |||| ||| |||||||||| ||||||||||||||||||||| ||||    
T  5423119 atgggtcctatttaataaatcttagtaaaatgaataaatttcgtta 5423074  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 159 - 208
Target Start/End: Original strand, 19279554 - 19279603
Alignment:
Q  159 ttttcatggatcccatttaataaaacttagtaaaatgaataaattttgtt 208  Q
    |||||||||||| |||||||||||  ||| |||||| |||||||||||||    
T  19279554 ttttcatggatcacatttaataaatattaataaaataaataaattttgtt 19279603  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 159 - 208
Target Start/End: Complemental strand, 35377920 - 35377871
Alignment:
Q  159 ttttcatggatcccatttaataaaacttagtaaaatgaataaattttgtt 208  Q
    ||||||||| || ||||||||||| |||| |||||| |||||||||||||    
T  35377920 ttttcatggctcacatttaataaatcttaataaaataaataaattttgtt 35377871  T

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Target: chr6 (Bit Score: 49; Significance: 4e-19; HSPs: 7)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 157 - 209
Target Start/End: Complemental strand, 20969738 - 20969686
Alignment:
Q  157 aattttcatggatcccatttaataaaacttagtaaaatgaataaattttgtta 209  Q
    |||||||||||||||||||||||||| ||||||||||||||||||||||||||    
T  20969738 aattttcatggatcccatttaataaatcttagtaaaatgaataaattttgtta 20969686  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 159 - 209
Target Start/End: Complemental strand, 6837932 - 6837882
Alignment:
Q  159 ttttcatggatcccatttaataaaacttagtaaaatgaataaattttgtta 209  Q
    ||||||||| || ||||||||||| ||||||||||||||||||||||||||    
T  6837932 ttttcatgggtctcatttaataaatcttagtaaaatgaataaattttgtta 6837882  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 159 - 209
Target Start/End: Original strand, 2912805 - 2912855
Alignment:
Q  159 ttttcatggatcccatttaataaaacttagtaaaatgaataaattttgtta 209  Q
    |||| |||| || ||||||||||| ||||||||||||||||||||||||||    
T  2912805 ttttaatgggtctcatttaataaatcttagtaaaatgaataaattttgtta 2912855  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 159 - 209
Target Start/End: Complemental strand, 13756560 - 13756509
Alignment:
Q  159 ttttcatgga-tcccatttaataaaacttagtaaaatgaataaattttgtta 209  Q
    |||||||||| || ||||||||||| ||||||||||||||||||| ||||||    
T  13756560 ttttcatggagtctcatttaataaatcttagtaaaatgaataaatcttgtta 13756509  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 71 - 140
Target Start/End: Original strand, 2912719 - 2912788
Alignment:
Q  71 cattaaataggcaccctcattcttgagtataacatatgggtgcttgtagaggagggtgactatggaagca 140  Q
    |||||||||||||||  |||| | |||| ||||||||| |||||  | |||||||||| |||||||||||    
T  2912719 cattaaataggcacctccattgtggagtgtaacatatgagtgctaatggaggagggtggctatggaagca 2912788  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 159 - 208
Target Start/End: Complemental strand, 15135008 - 15134959
Alignment:
Q  159 ttttcatggatcccatttaataaaacttagtaaaatgaataaattttgtt 208  Q
    ||||||||| || ||||||||||| |||| |||||| |||||||||||||    
T  15135008 ttttcatgggtctcatttaataaatcttaataaaataaataaattttgtt 15134959  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 208 - 244
Target Start/End: Original strand, 19838891 - 19838927
Alignment:
Q  208 tactccctccgtccctatatataacccccctttgctt 244  Q
    |||||||||||||||||||| ||| ||||||||||||    
T  19838891 tactccctccgtccctatatgtaatccccctttgctt 19838927  T

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Target: scaffold0127 (Bit Score: 47; Significance: 6e-18; HSPs: 1)
Name: scaffold0127
Description:

Target: scaffold0127; HSP #1
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 159 - 209
Target Start/End: Original strand, 22834 - 22884
Alignment:
Q  159 ttttcatggatcccatttaataaaacttagtaaaatgaataaattttgtta 209  Q
    |||||||||||||||||||||||| ||||||||||||||||||||||||||    
T  22834 ttttcatggatcccatttaataaatcttagtaaaatgaataaattttgtta 22884  T

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Target: chr8 (Bit Score: 44; Significance: 4e-16; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 71 - 207
Target Start/End: Original strand, 8845596 - 8845736
Alignment:
Q  71 cattaaataggcaccctcattcttgagtataacatatgggtgcttgtagaggagggtgactatggaagcaccnnnnnnnnnnnn----tcaattttcatg 166  Q
    ||||||||||||||   |||| | ||||||||||||||||||||| | |||||||||| |||||||||||||                ||| ||||||||    
T  8845596 cattaaataggcacttccattgtggagtataacatatgggtgcttatggaggagggtggctatggaagcaccctctctctctctctattcatttttcatg 8845695  T
Q  167 gatcccatttaataaaacttagtaaaatgaataaattttgt 207  Q
    | |||||||||||||| ||||||||||||||||||||||||    
T  8845696 ggtcccatttaataaatcttagtaaaatgaataaattttgt 8845736  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 157 - 205
Target Start/End: Original strand, 23629555 - 23629603
Alignment:
Q  157 aattttcatggatcccatttaataaaacttagtaaaatgaataaatttt 205  Q
    |||||| |||| ||| |||||||||| ||||||||||||||||||||||    
T  23629555 aatttttatgggtcctatttaataaatcttagtaaaatgaataaatttt 23629603  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 159 - 209
Target Start/End: Original strand, 7186311 - 7186361
Alignment:
Q  159 ttttcatggatcccatttaataaaacttagtaaaatgaataaattttgtta 209  Q
    ||||||||| |||||||||||||| |||| |||||| ||||||| ||||||    
T  7186311 ttttcatgggtcccatttaataaatcttaataaaataaataaatgttgtta 7186361  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 43; Significance: 0.000000000000001; HSPs: 11)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 159 - 209
Target Start/End: Complemental strand, 25734644 - 25734594
Alignment:
Q  159 ttttcatggatcccatttaataaaacttagtaaaatgaataaattttgtta 209  Q
    |||||||||||||||||||||||| ||||||||||||| ||||||||||||    
T  25734644 ttttcatggatcccatttaataaatcttagtaaaatgagtaaattttgtta 25734594  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 159 - 208
Target Start/End: Original strand, 12287203 - 12287252
Alignment:
Q  159 ttttcatggatcccatttaataaaacttagtaaaatgaataaattttgtt 208  Q
    |||||||||||| ||||||||||| |||| ||||||||||||||||||||    
T  12287203 ttttcatggatctcatttaataaatcttaataaaatgaataaattttgtt 12287252  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 160 - 205
Target Start/End: Complemental strand, 29235640 - 29235595
Alignment:
Q  160 tttcatggatcccatttaataaaacttagtaaaatgaataaatttt 205  Q
    ||||||||||||||||||||||| |||| |||||| ||||||||||    
T  29235640 tttcatggatcccatttaataaatcttaataaaataaataaatttt 29235595  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 172 - 208
Target Start/End: Complemental strand, 16706627 - 16706591
Alignment:
Q  172 catttaataaaacttagtaaaatgaataaattttgtt 208  Q
    ||||||||||| |||||||||||||||||||||||||    
T  16706627 catttaataaatcttagtaaaatgaataaattttgtt 16706591  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 172 - 208
Target Start/End: Complemental strand, 17680863 - 17680827
Alignment:
Q  172 catttaataaaacttagtaaaatgaataaattttgtt 208  Q
    ||||||||||| |||||||||||||||||||||||||    
T  17680863 catttaataaatcttagtaaaatgaataaattttgtt 17680827  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 159 - 207
Target Start/End: Complemental strand, 25742738 - 25742690
Alignment:
Q  159 ttttcatggatcccatttaataaaacttagtaaaatgaataaattttgt 207  Q
    ||||||||| ||||||||| |||| ||||||||||||| ||||||||||    
T  25742738 ttttcatgggtcccatttactaaatcttagtaaaatgagtaaattttgt 25742690  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 71 - 125
Target Start/End: Complemental strand, 16706727 - 16706674
Alignment:
Q  71 cattaaataggcaccctcattcttgagtataacatatgggtgcttgtagaggagg 125  Q
    |||||||||||||||| |||| | ||||||||||||||||||||| | |||||||    
T  16706727 cattaaataggcaccc-cattgtggagtataacatatgggtgcttatggaggagg 16706674  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 71 - 125
Target Start/End: Complemental strand, 17680963 - 17680910
Alignment:
Q  71 cattaaataggcaccctcattcttgagtataacatatgggtgcttgtagaggagg 125  Q
    |||||||||||||||| |||| | ||||||||||||||||||||| | |||||||    
T  17680963 cattaaataggcaccc-cattgtggagtataacatatgggtgcttatggaggagg 17680910  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 72 - 142
Target Start/End: Complemental strand, 35015948 - 35015878
Alignment:
Q  72 attaaataggcaccctcattcttgagtataacatatgggtgcttgtagaggagggtgactatggaagcacc 142  Q
    |||||||||||||||||||| | |||||||| |||||| ||  | ||||| | |||| |||||||||||||    
T  35015948 attaaataggcaccctcattgtggagtataatatatggatggctatagagaatggtggctatggaagcacc 35015878  T

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Target: chr7; HSP #10
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 159 - 208
Target Start/End: Original strand, 1911088 - 1911137
Alignment:
Q  159 ttttcatggatcccatttaataaaacttagtaaaatgaataaattttgtt 208  Q
    ||||||||| ||||| |||||||| |||| |||||| |||||||||||||    
T  1911088 ttttcatgggtcccagttaataaatcttaataaaataaataaattttgtt 1911137  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 159 - 208
Target Start/End: Complemental strand, 26576117 - 26576068
Alignment:
Q  159 ttttcatggatcccatttaataaaacttagtaaaatgaataaattttgtt 208  Q
    |||||||||||| ||||||||||  |||| |||||| |||||||||||||    
T  26576117 ttttcatggatctcatttaataattcttaataaaataaataaattttgtt 26576068  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 42; Significance: 0.000000000000006; HSPs: 5)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 71 - 209
Target Start/End: Original strand, 37333213 - 37333345
Alignment:
Q  71 cattaaataggcaccctcattcttgagtataacatatgggtgcttgtagaggagggtgactatggaagcaccnnnnnnnnnnnntcaattttcatggatc 170  Q
    |||||||||| || ||||||| | ||||||||||||| |||||||   ||| |||||| |||||||||||||            ||||||||||||| ||    
T  37333213 cattaaatagacatcctcattgtggagtataacatatcggtgcttacggagaagggtggctatggaagcaccctctct------tcaattttcatgggtc 37333306  T
Q  171 ccatttaataaaacttagtaaaatgaataaattttgtta 209  Q
     ||||||||||| |||||||||||||||||||| |||||    
T  37333307 acatttaataaaccttagtaaaatgaataaattatgtta 37333345  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 159 - 209
Target Start/End: Original strand, 1102928 - 1102978
Alignment:
Q  159 ttttcatggatcccatttaataaaacttagtaaaatgaataaattttgtta 209  Q
    ||||||||| || ||||||||||| ||||||||||||||||||||||||||    
T  1102928 ttttcatgggtctcatttaataaatcttagtaaaatgaataaattttgtta 1102978  T

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Target: chr3; HSP #3
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 71 - 128
Target Start/End: Original strand, 1102827 - 1102884
Alignment:
Q  71 cattaaataggcaccctcattcttgagtataacatatgggtgcttgtagaggagggtg 128  Q
    |||||||||| ||| |||||| | ||||||||||||||||||| |||  |||||||||    
T  1102827 cattaaatagacacactcattgtggagtataacatatgggtgcctgtcaaggagggtg 1102884  T

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Target: chr3; HSP #4
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 172 - 209
Target Start/End: Original strand, 20826319 - 20826356
Alignment:
Q  172 catttaataaaacttagtaaaatgaataaattttgtta 209  Q
    ||||||||||| ||||||| ||||||||||||||||||    
T  20826319 catttaataaatcttagtataatgaataaattttgtta 20826356  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 160 - 209
Target Start/End: Complemental strand, 46909930 - 46909881
Alignment:
Q  160 tttcatggatcccatttaataaaacttagtaaaatgaataaattttgtta 209  Q
    |||||||| |||||||||||||| |||| |||||| ||||| ||||||||    
T  46909930 tttcatgggtcccatttaataaatcttaataaaataaataatttttgtta 46909881  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 10)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 159 - 209
Target Start/End: Original strand, 43334654 - 43334704
Alignment:
Q  159 ttttcatggatcccatttaataaaacttagtaaaatgaataaattttgtta 209  Q
    ||||||||| ||| |||||||||| ||||||||||||||||||||||||||    
T  43334654 ttttcatgggtcctatttaataaatcttagtaaaatgaataaattttgtta 43334704  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 159 - 206
Target Start/End: Complemental strand, 37182590 - 37182543
Alignment:
Q  159 ttttcatggatcccatttaataaaacttagtaaaatgaataaattttg 206  Q
    ||||||||| |||||| ||||||| |||||||||||||||||||||||    
T  37182590 ttttcatgggtcccatctaataaatcttagtaaaatgaataaattttg 37182543  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 155 - 201
Target Start/End: Complemental strand, 19477615 - 19477569
Alignment:
Q  155 tcaattttcatggatcccatttaataaaacttagtaaaatgaataaa 201  Q
    ||||||||||||| |||||||||||| | ||||||||||||||||||    
T  19477615 tcaattttcatgggtcccatttaatatatcttagtaaaatgaataaa 19477569  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 99 - 141
Target Start/End: Original strand, 43334580 - 43334622
Alignment:
Q  99 ataacatatgggtgcttgtagaggagggtgactatggaagcac 141  Q
    ||||||||||||||||| |||||||||||| ||||||||||||    
T  43334580 ataacatatgggtgcttatagaggagggtggctatggaagcac 43334622  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 208 - 244
Target Start/End: Original strand, 7002142 - 7002178
Alignment:
Q  208 tactccctccgtccctatatataacccccctttgctt 244  Q
    ||||||||||||||||||||||||||||| |||||||    
T  7002142 tactccctccgtccctatatataacccccttttgctt 7002178  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 72 - 142
Target Start/End: Complemental strand, 37182687 - 37182617
Alignment:
Q  72 attaaataggcaccctcattcttgagtataacatatgggtgcttgtagaggagggtgactatggaagcacc 142  Q
    |||||||| ||||||||||| | |||| |||||||||||||  | | |||||||||| |||| ||||||||    
T  37182687 attaaataagcaccctcattgtggagtgtaacatatgggtgtctatggaggagggtggctatagaagcacc 37182617  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 159 - 208
Target Start/End: Original strand, 16529955 - 16530004
Alignment:
Q  159 ttttcatggatcccatttaataaaacttagtaaaatgaataaattttgtt 208  Q
    ||||||||| |||| ||||||||| |||| |||||| |||||||||||||    
T  16529955 ttttcatgggtcccttttaataaatcttaataaaataaataaattttgtt 16530004  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 159 - 208
Target Start/End: Complemental strand, 44516051 - 44516002
Alignment:
Q  159 ttttcatggatcccatttaataaaacttagtaaaatgaataaattttgtt 208  Q
    ||||||||| ||||||||||||||  ||| |||||| |||||||||||||    
T  44516051 ttttcatgggtcccatttaataaatattaataaaataaataaattttgtt 44516002  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 208 - 244
Target Start/End: Original strand, 12624656 - 12624692
Alignment:
Q  208 tactccctccgtccctatatataacccccctttgctt 244  Q
    |||||||||||||||||||| ||||||||| ||||||    
T  12624656 tactccctccgtccctatatgtaaccccccgttgctt 12624692  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 159 - 207
Target Start/End: Original strand, 17999032 - 17999080
Alignment:
Q  159 ttttcatggatcccatttaataaaacttagtaaaatgaataaattttgt 207  Q
    ||||||||| |||||||||||||| | || |||||| ||||||||||||    
T  17999032 ttttcatgggtcccatttaataaatcgtattaaaataaataaattttgt 17999080  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 7)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 155 - 209
Target Start/End: Original strand, 51776664 - 51776718
Alignment:
Q  155 tcaattttcatggatcccatttaataaaacttagtaaaatgaataaattttgtta 209  Q
    ||||||||||||| || ||||||||||| ||||||||||||||||||||| ||||    
T  51776664 tcaattttcatgggtcacatttaataaatcttagtaaaatgaataaatttcgtta 51776718  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 158 - 209
Target Start/End: Complemental strand, 42693468 - 42693417
Alignment:
Q  158 attttcatggatcccatttaataaaacttagtaaaatgaataaattttgtta 209  Q
    |||||||||| |  ||||||||||| ||||||||||||||||||||||||||    
T  42693468 attttcatgggtttcatttaataaatcttagtaaaatgaataaattttgtta 42693417  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 72 - 142
Target Start/End: Complemental strand, 42693559 - 42693489
Alignment:
Q  72 attaaataggcaccctcattcttgagtataacatatgggtgcttgtagaggagggtgactatggaagcacc 142  Q
    ||||||||||||||  || | | |||||||||||||||||| || | |||||||||| |||||||||||||    
T  42693559 attaaataggcacctccaatgtggagtataacatatgggtgtttatggaggagggtggctatggaagcacc 42693489  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 158 - 208
Target Start/End: Complemental strand, 43728607 - 43728557
Alignment:
Q  158 attttcatggatcccatttaataaaacttagtaaaatgaataaattttgtt 208  Q
    |||||||||||| |||||||||||| |||||||||||||| ||| ||||||    
T  43728607 attttcatggattccatttaataaatcttagtaaaatgaaaaaaatttgtt 43728557  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 208 - 244
Target Start/End: Complemental strand, 15512925 - 15512889
Alignment:
Q  208 tactccctccgtccctatatataacccccctttgctt 244  Q
    |||||||||||||||||||| ||||||||||||||||    
T  15512925 tactccctccgtccctatatgtaacccccctttgctt 15512889  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 208 - 244
Target Start/End: Complemental strand, 28949108 - 28949072
Alignment:
Q  208 tactccctccgtccctatatataacccccctttgctt 244  Q
    |||||||||||||||||||| ||||||||||||||||    
T  28949108 tactccctccgtccctatatgtaacccccctttgctt 28949072  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 208 - 244
Target Start/End: Complemental strand, 4813606 - 4813570
Alignment:
Q  208 tactccctccgtccctatatataacccccctttgctt 244  Q
    |||||||| |||||||||||||||||||| |||||||    
T  4813606 tactcccttcgtccctatatataacccccttttgctt 4813570  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 34; Significance: 0.0000000003; HSPs: 5)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 159 - 208
Target Start/End: Original strand, 25322933 - 25322982
Alignment:
Q  159 ttttcatggatcccatttaataaaacttagtaaaatgaataaattttgtt 208  Q
    ||||||||| |||||||||||||| |||| |||||| |||||||||||||    
T  25322933 ttttcatgggtcccatttaataaatcttaataaaataaataaattttgtt 25322982  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 208 - 244
Target Start/End: Original strand, 17663584 - 17663620
Alignment:
Q  208 tactccctccgtccctatatataacccccctttgctt 244  Q
    |||||||||||||||||||| ||||||||||||||||    
T  17663584 tactccctccgtccctatatgtaacccccctttgctt 17663620  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 163 - 208
Target Start/End: Complemental strand, 7315328 - 7315283
Alignment:
Q  163 catggatcccatttaataaaacttagtaaaatgaataaattttgtt 208  Q
    ||||| |||||||||||||| |||| |||||| |||||||||||||    
T  7315328 catgggtcccatttaataaatcttaataaaataaataaattttgtt 7315283  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 73 - 142
Target Start/End: Complemental strand, 7315416 - 7315347
Alignment:
Q  73 ttaaataggcaccctcattcttgagtataacatatgggtgcttgtagaggagggtgactatggaagcacc 142  Q
    |||||||| |||||||||| | |||||||| | |||||||  | | ||| ||||||||||||||||||||    
T  7315416 ttaaatagacaccctcattgtggagtataatacatgggtggctatggagaagggtgactatggaagcacc 7315347  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 159 - 207
Target Start/End: Original strand, 20638559 - 20638607
Alignment:
Q  159 ttttcatggatcccatttaataaaacttagtaaaatgaataaattttgt 207  Q
    ||||||||| |||||||||||||| | || |||||| ||||||||||||    
T  20638559 ttttcatgggtcccatttaataaatcgtattaaaataaataaattttgt 20638607  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0355 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: scaffold0355
Description:

Target: scaffold0355; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 159 - 208
Target Start/End: Complemental strand, 2750 - 2702
Alignment:
Q  159 ttttcatggatcccatttaataaaacttagtaaaatgaataaattttgtt 208  Q
    ||||||||| |||||||||||||| |||| |||||| |||||||||||||    
T  2750 ttttcatgg-tcccatttaataaatcttaataaaataaataaattttgtt 2702  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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