View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10821_low_46 (Length: 250)
Name: NF10821_low_46
Description: NF10821
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10821_low_46 |
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Alignment Details
Target: chr1 (Bit Score: 204; Significance: 1e-111; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 204; E-Value: 1e-111
Query Start/End: Original strand, 33 - 240
Target Start/End: Original strand, 47719747 - 47719954
Alignment:
| Q |
33 |
aaacgaaaccttcaatcttatctgaattccaacaaaatgcaccttagacgaataattgtgttattttatttttgatattctttggtggatgagtcagtga |
132 |
Q |
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| T |
47719747 |
aaacgaaaccttcaatcttatctgaattccaacaaaatgcaccttagacgaataattgagttattttatttttgatattctttggtggatgagtcagtga |
47719846 |
T |
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| Q |
133 |
aacggatacatttgttattgattatttgttttgattctttcctggtcaatttgggcgtcttgcctttttggggttttgctgttgttgtagcctcctgtag |
232 |
Q |
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| T |
47719847 |
aacggatacatttgttattgattatttgttttgattctttcctggtcaatttgggcgtcttgcctttttggggttttgctgttgttgtagcctcctgtag |
47719946 |
T |
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| Q |
233 |
tacctatg |
240 |
Q |
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|||||||| |
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| T |
47719947 |
tacctatg |
47719954 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 157; E-Value: 1e-83
Query Start/End: Original strand, 80 - 240
Target Start/End: Original strand, 47726786 - 47726946
Alignment:
| Q |
80 |
acgaataattgtgttattttatttttgatattctttggtggatgagtcagtgaaacggatacatttgttattgattatttgttttgattctttcctggtc |
179 |
Q |
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| T |
47726786 |
acgaataattgagttattttatttttgatattctttggtggatgagtcagtgaaacggatacatttgttattgattatttgttttgattctttcctggtc |
47726885 |
T |
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| Q |
180 |
aatttgggcgtcttgcctttttggggttttgctgttgttgtagcctcctgtagtacctatg |
240 |
Q |
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| T |
47726886 |
aatttgggcgtcttgcctttttggggttttgctgttgttgtagcctcctgtagtacctatg |
47726946 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 120; E-Value: 2e-61
Query Start/End: Original strand, 80 - 207
Target Start/End: Original strand, 47748092 - 47748219
Alignment:
| Q |
80 |
acgaataattgtgttattttatttttgatattctttggtggatgagtcagtgaaacggatacatttgttattgattatttgttttgattctttcctggtc |
179 |
Q |
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||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
47748092 |
acgaataattgagttattttatttttgatattctttggtggatgagtcagtgaaacggatacatttgttattgattatttgttttgattctttcctggtc |
47748191 |
T |
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| Q |
180 |
aatttgggcgtcttgcctttttggggtt |
207 |
Q |
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| T |
47748192 |
aatttgggcgtcttgccttttaggggtt |
47748219 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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