View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10821_low_5 (Length: 456)
Name: NF10821_low_5
Description: NF10821
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10821_low_5 |
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Alignment Details
Target: chr3 (Bit Score: 341; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 341; E-Value: 0
Query Start/End: Original strand, 18 - 450
Target Start/End: Original strand, 41836552 - 41836990
Alignment:
| Q |
18 |
aattgaagtacaacttgccaatctgaacattctgcattacacgcgaggaaatcaatcacagcctctcaggtacagatagtacatgaggagtggtgacaac |
117 |
Q |
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| T |
41836552 |
aattgaagtacaacttgccaatctgaacattctgcattacaagcgaggaaatcaatcacagcctctcaggcacagatggtacatgaggagtggtgacaac |
41836651 |
T |
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| Q |
118 |
attaatacta---acaaaagagannnnnnngacagaaagtttgaagaagagatgaatgaacaatat-agctgatttgtttgatgtataatttaaacgcca |
213 |
Q |
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| T |
41836652 |
attaatactactaacaaaagtgatttttttgacagaaagtttgaagaagagatgaatgaacaatattagctgatttgtttgatgtataatttaaacgcta |
41836751 |
T |
|
| Q |
214 |
agtagtcggtttgttagttgtttatgctacaagttagctaaataagattgagttagtta--gttagagattatcttgatcacacgattacttgttaatca |
311 |
Q |
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| T |
41836752 |
agtagtcggtttgttagttgtttatgctacaagttagctaaataagattgagttagttatagttagagattatcttgatcacacggttacttgttaatca |
41836851 |
T |
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| Q |
312 |
agtaaggatagtttgttagcataatcctttttacatataagattaatgtatcttgtattttgtatcttctccattcaatacatttacacggttttcgttc |
411 |
Q |
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| T |
41836852 |
agtaagcgtagtttattagcataatcctttttacatataagattaatgtaccttgtattttgcatcttctccattcaatacatttacacggttttcgttc |
41836951 |
T |
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| Q |
412 |
atattctatgtcattattcttctaaatatttcatctcac |
450 |
Q |
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| T |
41836952 |
atattctatgtcattattcttctaaatatttcatctcac |
41836990 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 44; Significance: 7e-16; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 224 - 283
Target Start/End: Complemental strand, 36975494 - 36975435
Alignment:
| Q |
224 |
ttgttagttgtttatgctacaagttagctaaataagattgagttagttagttagagatta |
283 |
Q |
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| T |
36975494 |
ttgttagttgtttatgctacaagttagctaaatatgatcgacttagctagttagagatta |
36975435 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 222 - 292
Target Start/End: Original strand, 33830066 - 33830134
Alignment:
| Q |
222 |
gtttgttagttgtttatgctacaagttagctaaataagattgagttagttagttagagattatcttgatca |
292 |
Q |
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| T |
33830066 |
gtttgttagttgcttaagatacaagttagctaaata--attgagttagtcagctagagattaacttgatca |
33830134 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 222 - 292
Target Start/End: Complemental strand, 33837900 - 33837832
Alignment:
| Q |
222 |
gtttgttagttgtttatgctacaagttagctaaataagattgagttagttagttagagattatcttgatca |
292 |
Q |
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| T |
33837900 |
gtttgttagttgcttaagatacaagttagctaaata--attgagttagtcagctagagattaacttgatca |
33837832 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 35; Significance: 0.0000000002; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 222 - 316
Target Start/End: Original strand, 33087423 - 33087522
Alignment:
| Q |
222 |
gtttgttagttgtttatgctacaagttagctaaataagattgagttagt----tagttagagattatcttgatcaca-cgattacttgttaatcaagtaa |
316 |
Q |
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||||||| |||| ||| ||||||||||||| |||||||| ||||||||| ||||||||||||| |||||| | | | ||||||||||||||||||| |
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| T |
33087423 |
gtttgttcgttgcttaagctacaagttagcgaaataagactgagttagttagctagttagagattaacttgattatatggtttacttgttaatcaagtaa |
33087522 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 264 - 316
Target Start/End: Original strand, 30301774 - 30301825
Alignment:
| Q |
264 |
agttagttagttagagattatcttgatcacacgattacttgttaatcaagtaa |
316 |
Q |
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| T |
30301774 |
agttagttagttagaaataa-cttgatcacatgattacttgttagtcaagtaa |
30301825 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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