View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10821_low_55 (Length: 246)
Name: NF10821_low_55
Description: NF10821
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10821_low_55 |
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Alignment Details
Target: chr2 (Bit Score: 212; Significance: 1e-116; HSPs: 8)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 212; E-Value: 1e-116
Query Start/End: Original strand, 14 - 233
Target Start/End: Original strand, 2462511 - 2462730
Alignment:
| Q |
14 |
agatgcagtgaggttgtgggtgaatgagaaagctgactatgattataatagtaacacatgtgcttctggtaaagtgtgtggccattatactcaggttgtt |
113 |
Q |
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||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
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| T |
2462511 |
agatgcagtgaagttgtgggtgaatgagaaagctgactatgattataatagtaacacatgtgcttctggtaaagtgtgtggccattatacccaggttgtt |
2462610 |
T |
|
| Q |
114 |
tggagaaactcacaacgtgttggatgtgccaaagtgagatgtgataataatagaggaacattcattacatgcaattacgacccaccaggcaactatgttg |
213 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2462611 |
tggagaaactcacaacgtgttggatgtgccaaagtgagatgtgataataatagaggaacattcattacatgcaattacgacccaccaggcaactatgttg |
2462710 |
T |
|
| Q |
214 |
gtgaaaagccatactaagtg |
233 |
Q |
| |
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|||||||||||||||||||| |
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| T |
2462711 |
gtgaaaagccatactaagtg |
2462730 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 205; E-Value: 1e-112
Query Start/End: Original strand, 14 - 226
Target Start/End: Complemental strand, 3063486 - 3063274
Alignment:
| Q |
14 |
agatgcagtgaggttgtgggtgaatgagaaagctgactatgattataatagtaacacatgtgcttctggtaaagtgtgtggccattatactcaggttgtt |
113 |
Q |
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||||||||||| |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3063486 |
agatgcagtgaagttgtgggtgaatgagaaagctgactataattataatagtaacacatgtgcttctggtaaagtgtgtggccattatactcaggttgtt |
3063387 |
T |
|
| Q |
114 |
tggagaaactcacaacgtgttggatgtgccaaagtgagatgtgataataatagaggaacattcattacatgcaattacgacccaccaggcaactatgttg |
213 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3063386 |
tggagaaactcacaacgtgttggatgtgccaaagtgagatgtgataataatagaggaacattcattacatgcaattacgacccaccaggcaactatgttg |
3063287 |
T |
|
| Q |
214 |
gtgaaaagccata |
226 |
Q |
| |
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||||||||||||| |
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| T |
3063286 |
gtgaaaagccata |
3063274 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 198; E-Value: 1e-108
Query Start/End: Original strand, 14 - 233
Target Start/End: Original strand, 2466559 - 2466775
Alignment:
| Q |
14 |
agatgcagtgaggttgtgggtgaatgagaaagctgactatgattataatagtaacacatgtgcttctggtaaagtgtgtggccattatactcaggttgtt |
113 |
Q |
| |
|
||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
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| T |
2466559 |
agatgcagtgaagttgtgggtgaatgagaaagctgactatgattataatagtaacacatgtgcttctggtaaagtgtgtggccattatacccaggttgtt |
2466658 |
T |
|
| Q |
114 |
tggagaaactcacaacgtgttggatgtgccaaagtgagatgtgataataatagaggaacattcattacatgcaattacgacccaccaggcaactatgttg |
213 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |
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| T |
2466659 |
tggagaaactcacaacgtgttggatgtgccaaagtgagatgtgataataatagaggaacattcattacatgcaattacgacccaccaggcaact---ttg |
2466755 |
T |
|
| Q |
214 |
gtgaaaagccatactaagtg |
233 |
Q |
| |
|
|||||||||||||||||||| |
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| T |
2466756 |
gtgaaaagccatactaagtg |
2466775 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 138; E-Value: 3e-72
Query Start/End: Original strand, 14 - 233
Target Start/End: Original strand, 2457935 - 2458151
Alignment:
| Q |
14 |
agatgcagtgaggttgtgggtgaatgagaaagctgactatgattataatagtaacacatgtgcttctggtaaagtgtgtggccattatactcaggttgtt |
113 |
Q |
| |
|
||||||||||||||||||||||||||||||| |||||| | |||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |
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|
| T |
2457935 |
agatgcagtgaggttgtgggtgaatgagaaaaacgactataactataatagtaacacatgtgcttctggtaaagtgtgtggccattacactcaggttgtt |
2458034 |
T |
|
| Q |
114 |
tggagaaactcacaacgtgttggatgtgccaaagtgagatgtgataataatagaggaacattcattacatgcaattacgacccaccaggcaactatgttg |
213 |
Q |
| |
|
||||||||| || | ||| |||||||||||||||| ||||| ||||||| |||| |||||||||| ||||||||||| ||||||||||||||||||| |
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| T |
2458035 |
tggagaaacacaaagcgtattggatgtgccaaagtaagatg---taataatggaggcacattcattatttgcaattacgatccaccaggcaactatgttg |
2458131 |
T |
|
| Q |
214 |
gtgaaaagccatactaagtg |
233 |
Q |
| |
|
|| ||||||||||||||||| |
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| T |
2458132 |
gtcaaaagccatactaagtg |
2458151 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 93; E-Value: 2e-45
Query Start/End: Original strand, 21 - 235
Target Start/End: Original strand, 2469891 - 2470102
Alignment:
| Q |
21 |
gtgaggttgtgggtgaatgagaaagctgactatgattataatagtaacacatgtgcttctggtaaagtgtgtggccattatactcaggttgtttggagaa |
120 |
Q |
| |
|
|||| |||||||||| |||| ||| | |||||||||||| |||||| |||||||| |||| || |||||||||| || |||||||| |||||||||| |
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| T |
2469891 |
gtgaagttgtgggtggatgaaaaaccctactatgattatagtagtaattcatgtgctaatggtgaaatgtgtggccactacactcaggtggtttggagaa |
2469990 |
T |
|
| Q |
121 |
actcacaacgtgttggatgtgccaaagtgagatgtgataataatagaggaacattcattacatgcaattacgacccaccaggcaactatgttggtgaaaa |
220 |
Q |
| |
|
|| ||||||| |||||||||||||||||| ||| |||||| |||||||||||||||| ||||||||||||||||||||||||||| |||| |||| |
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| T |
2469991 |
acacacaacggattggatgtgccaaagtgaaatg---taataacggaggaacattcattacttgcaattacgacccaccaggcaactatattggcgaaag |
2470087 |
T |
|
| Q |
221 |
gccatactaagtgat |
235 |
Q |
| |
|
|||||||||||||| |
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| T |
2470088 |
accatactaagtgat |
2470102 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #6
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 95 - 235
Target Start/End: Original strand, 2474236 - 2474373
Alignment:
| Q |
95 |
ccattatactcaggttgtttggagaaactcacaacgtgttggatgtgccaaagtgagatgtgataataatagaggaacattcattacatgcaattacgac |
194 |
Q |
| |
|
||||||||||||||| |||||||||||| || ||||| |||||||||||||||||| ||||| ||||| |||||||||||||||| |||||||||||| |
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|
| T |
2474236 |
ccattatactcaggtggtttggagaaacacaaaacgtattggatgtgccaaagtgaaatgtg---ataatggaggaacattcattacttgcaattacgac |
2474332 |
T |
|
| Q |
195 |
ccaccaggcaactatgttggtgaaaagccatactaagtgat |
235 |
Q |
| |
|
|| || ||||||||| |||| |||| ||||||||| |||| |
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| T |
2474333 |
ccccctggcaactatattggcgaaagaccatactaattgat |
2474373 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #7
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 123 - 199
Target Start/End: Original strand, 2471017 - 2471090
Alignment:
| Q |
123 |
tcacaacgtgttggatgtgccaaagtgagatgtgataataatagaggaacattcattacatgcaattacgacccacc |
199 |
Q |
| |
|
||||||||||||||||||| |||||||||||||| ||||| |||| ||||||||||| |||||||| |||||||| |
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|
| T |
2471017 |
tcacaacgtgttggatgtggcaaagtgagatgtg---ataatggaggcacattcattacttgcaattatgacccacc |
2471090 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #8
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 95 - 161
Target Start/End: Original strand, 2486510 - 2486576
Alignment:
| Q |
95 |
ccattatactcaggttgtttggagaaactcacaacgtgttggatgtgccaaagtgagatgtgataat |
161 |
Q |
| |
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|||||||||||||||||||||| ||| |||| |||||||||||||| |||||||| |||||||||| |
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|
| T |
2486510 |
ccattatactcaggttgtttgggaaaaatcactacgtgttggatgtggcaaagtgaaatgtgataat |
2486576 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 205; Significance: 1e-112; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 205; E-Value: 1e-112
Query Start/End: Original strand, 14 - 226
Target Start/End: Original strand, 18015834 - 18016046
Alignment:
| Q |
14 |
agatgcagtgaggttgtgggtgaatgagaaagctgactatgattataatagtaacacatgtgcttctggtaaagtgtgtggccattatactcaggttgtt |
113 |
Q |
| |
|
||||||||||| |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
18015834 |
agatgcagtgaagttgtgggtgaatgagaaagctgactataattataatagtaacacatgtgcttctggtaaagtgtgtggccattatactcaggttgtt |
18015933 |
T |
|
| Q |
114 |
tggagaaactcacaacgtgttggatgtgccaaagtgagatgtgataataatagaggaacattcattacatgcaattacgacccaccaggcaactatgttg |
213 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
18015934 |
tggagaaactcacaacgtgttggatgtgccaaagtgagatgtgataataatagaggaacattcattacatgcaattacgacccaccaggcaactatgttg |
18016033 |
T |
|
| Q |
214 |
gtgaaaagccata |
226 |
Q |
| |
|
||||||||||||| |
|
|
| T |
18016034 |
gtgaaaagccata |
18016046 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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