View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10821_low_56 (Length: 245)
Name: NF10821_low_56
Description: NF10821
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10821_low_56 |
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Alignment Details
Target: chr3 (Bit Score: 189; Significance: 1e-102; HSPs: 6)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 189; E-Value: 1e-102
Query Start/End: Original strand, 1 - 237
Target Start/End: Complemental strand, 37634696 - 37634460
Alignment:
| Q |
1 |
cttcaggttccaaggacatggaatgaagttggttgaaaccgaaggaccaccctttgttcaacctgtttatgcctctcttgcctttcacgttgaacaatgc |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||| ||| | |||||||| |||||||| |||||||| | ||||||||| ||||||| |
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| T |
37634696 |
cttcaggttccaaggacatggaatgaagttggttgaaaccgaaggatcacacgttgttcaaaatgtttatgactctcttgacgttcacgttggacaatgc |
37634597 |
T |
|
| Q |
101 |
tcccctgtcctcgtgaccgccgataaagagccaagggactattacatgattgcctccacccgtatgaccaagtacaatctacttggaaagggtattgttc |
200 |
Q |
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| | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37634596 |
tacactgtcctcgtgaccgccgataaagagccaagggactattacatgattgcctccacccgtatgaccaagtacaatctacttggaaagggtattgttc |
37634497 |
T |
|
| Q |
201 |
gttacaccaacggaaaaggtcccgcttcacctatgct |
237 |
Q |
| |
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|||||||||||||||||||||||||||||||| |||| |
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| T |
37634496 |
gttacaccaacggaaaaggtcccgcttcacctgtgct |
37634460 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 189; E-Value: 1e-102
Query Start/End: Original strand, 1 - 237
Target Start/End: Complemental strand, 37637610 - 37637374
Alignment:
| Q |
1 |
cttcaggttccaaggacatggaatgaagttggttgaaaccgaaggaccaccctttgttcaacctgtttatgcctctcttgcctttcacgttgaacaatgc |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||| ||| | |||||||| |||||||| |||||||| | ||||||||| ||||||| |
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| T |
37637610 |
cttcaggttccaaggacatggaatgaagttggttgaaaccgaaggatcacacgttgttcaaaatgtttatgactctcttgacgttcacgttggacaatgc |
37637511 |
T |
|
| Q |
101 |
tcccctgtcctcgtgaccgccgataaagagccaagggactattacatgattgcctccacccgtatgaccaagtacaatctacttggaaagggtattgttc |
200 |
Q |
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| | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37637510 |
tacactgtcctcgtgaccgccgataaagagccaagggactattacatgattgcctccacccgtatgaccaagtacaatctacttggaaagggtattgttc |
37637411 |
T |
|
| Q |
201 |
gttacaccaacggaaaaggtcccgcttcacctatgct |
237 |
Q |
| |
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|||||||||||||||||||||||||||||||| |||| |
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| T |
37637410 |
gttacaccaacggaaaaggtcccgcttcacctgtgct |
37637374 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 185; E-Value: 1e-100
Query Start/End: Original strand, 1 - 237
Target Start/End: Complemental strand, 37645898 - 37645662
Alignment:
| Q |
1 |
cttcaggttccaaggacatggaatgaagttggttgaaaccgaaggaccaccctttgttcaacctgtttatgcctctcttgcctttcacgttgaacaatgc |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||| ||| | |||||||| |||||||| |||||||| | ||||||||| ||||||| |
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| T |
37645898 |
cttcaggttccaaggacatggaatgaagttggttgaaaccgaaggatcacacgttgttcaaaatgtttatgactctcttgacgttcacgttggacaatgc |
37645799 |
T |
|
| Q |
101 |
tcccctgtcctcgtgaccgccgataaagagccaagggactattacatgattgcctccacccgtatgaccaagtacaatctacttggaaagggtattgttc |
200 |
Q |
| |
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| | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |
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| T |
37645798 |
tacactgtcctcgtgaccgccgataaagagccaagggactattacatgattgcctccacccgtatgaccaagtacaatctagttggaaagggtattgttc |
37645699 |
T |
|
| Q |
201 |
gttacaccaacggaaaaggtcccgcttcacctatgct |
237 |
Q |
| |
|
|||||||||||||||||||||||||||||||| |||| |
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| T |
37645698 |
gttacaccaacggaaaaggtcccgcttcacctttgct |
37645662 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 181; E-Value: 6e-98
Query Start/End: Original strand, 1 - 237
Target Start/End: Complemental strand, 37640524 - 37640288
Alignment:
| Q |
1 |
cttcaggttccaaggacatggaatgaagttggttgaaaccgaaggaccaccctttgttcaacctgtttatgcctctcttgcctttcacgttgaacaatgc |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||| ||| | |||||||| |||||||| |||||||| | ||||||||| ||||||| |
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| T |
37640524 |
cttcaggttccaaggacatggaatgaagttggttgaaaccgaaggatcacacgttgttcaaaatgtttatgactctcttgacgttcacgttggacaatgc |
37640425 |
T |
|
| Q |
101 |
tcccctgtcctcgtgaccgccgataaagagccaagggactattacatgattgcctccacccgtatgaccaagtacaatctacttggaaagggtattgttc |
200 |
Q |
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| | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | | |
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| T |
37640424 |
tacactgtcctcgtgaccgccgataaagagccaagggactattacatgattgcctccacccgtatgaccaagtacaatctacttggaaagggtattatac |
37640325 |
T |
|
| Q |
201 |
gttacaccaacggaaaaggtcccgcttcacctatgct |
237 |
Q |
| |
|
|||||||||||||||||||||||||||||||| |||| |
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| T |
37640324 |
gttacaccaacggaaaaggtcccgcttcacctgtgct |
37640288 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 181; E-Value: 6e-98
Query Start/End: Original strand, 1 - 237
Target Start/End: Complemental strand, 37648811 - 37648575
Alignment:
| Q |
1 |
cttcaggttccaaggacatggaatgaagttggttgaaaccgaaggaccaccctttgttcaacctgtttatgcctctcttgcctttcacgttgaacaatgc |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||| ||| | |||||||| |||||||| |||||||| | ||||||||| ||||||| |
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| T |
37648811 |
cttcaggttccaaggacatggaatgaagttggttgaaaccgaaggatcacacgttgttcaaaatgtttatgactctcttgacgttcacgttggacaatgc |
37648712 |
T |
|
| Q |
101 |
tcccctgtcctcgtgaccgccgataaagagccaagggactattacatgattgcctccacccgtatgaccaagtacaatctacttggaaagggtattgttc |
200 |
Q |
| |
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| | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | | |
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| T |
37648711 |
tacactgtcctcgtgaccgccgataaagagccaagggactattacatgattgcctccacccgtatgaccaagtacaatctacttggaaagggtattatac |
37648612 |
T |
|
| Q |
201 |
gttacaccaacggaaaaggtcccgcttcacctatgct |
237 |
Q |
| |
|
|||||||||||||||||||||||||||||||| |||| |
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| T |
37648611 |
gttacaccaacggaaaaggtcccgcttcacctgtgct |
37648575 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 149; E-Value: 8e-79
Query Start/End: Original strand, 1 - 237
Target Start/End: Complemental strand, 37651723 - 37651487
Alignment:
| Q |
1 |
cttcaggttccaaggacatggaatgaagttggttgaaaccgaaggaccaccctttgttcaacctgtttatgcctctcttgcctttcacgttgaacaatgc |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||| ||||| ||| |||||||| ||| |||| |||||| | | |||| |||| |||||| |
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| T |
37651723 |
cttcaggttccaaggacatggaatgaagttggttgaaactgaaggctcacatgttgttcaaaatgtctatgactctctcgacgttcatgttgggcaatgc |
37651624 |
T |
|
| Q |
101 |
tcccctgtcctcgtgaccgccgataaagagccaagggactattacatgattgcctccacccgtatgaccaagtacaatctacttggaaagggtattgttc |
200 |
Q |
| |
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| | |||||||||||||||||||||||||||||| ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| | | |
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| T |
37651623 |
tacactgtcctcgtgaccgccgataaagagccaaaggactattacatggttgcctccacccgtatgaccaagtacaatctacttggaaagggtattatac |
37651524 |
T |
|
| Q |
201 |
gttacaccaacggaaaaggtcccgcttcacctatgct |
237 |
Q |
| |
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||||||||||||||||||||||||||||||||||||| |
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|
| T |
37651523 |
gttacaccaacggaaaaggtcccgcttcacctatgct |
37651487 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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