View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10821_low_58 (Length: 243)
Name: NF10821_low_58
Description: NF10821
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10821_low_58 |
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Alignment Details
Target: chr1 (Bit Score: 182; Significance: 2e-98; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 182; E-Value: 2e-98
Query Start/End: Original strand, 10 - 224
Target Start/End: Original strand, 1718338 - 1718552
Alignment:
| Q |
10 |
gagagaagaagcaagatgcaaaaacttttctatcagnnnnnnngttgctccgaacaacaatgtaactgctgcgcagcaatattctcagtttcactcggat |
109 |
Q |
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| T |
1718338 |
gagagaagaagcaagatgcaaaaacttttctatcagaaaaaaagttactccgaacaacaatgtaactgctgcgcagcaatattctcagtttcactcggat |
1718437 |
T |
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| Q |
110 |
atggctgctcaagcagacgctaaagaaacagctgaagaaaaaggaagggaagcaagagatgatgaagttatggttttgttaaaagtggaatgcatgaaga |
209 |
Q |
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| T |
1718438 |
atggctgctcaagcagacgctaaagaaacagctgaagaaaaagaaagggaagcaagagatgatgaagttatggttttgttaaaagaggaatgcatgaaga |
1718537 |
T |
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| Q |
210 |
atcaagaggagctcg |
224 |
Q |
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| T |
1718538 |
atcaagaggagctcg |
1718552 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 43; Significance: 0.000000000000001; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 94 - 152
Target Start/End: Complemental strand, 20007089 - 20007031
Alignment:
| Q |
94 |
tcagtttcactcggatatggctgctcaagcagacgctaaagaaacagctgaagaaaaag |
152 |
Q |
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| T |
20007089 |
tcagtttcactctgatatggctgctcaagcagaagctaaagaaacggttgaagaaaaag |
20007031 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 116 - 219
Target Start/End: Original strand, 26648411 - 26648514
Alignment:
| Q |
116 |
gctcaagcagacgctaaagaaacagctgaagaaaaaggaagggaagcaagagatgatgaagttatggttttgttaaaagtggaatgcatgaagaatcaag |
215 |
Q |
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| T |
26648411 |
gctcaagcacaagctaaagaagcggttgaagaaaaaggaaggaaagaaagtgatcatgaagttgtggttttgttaaaagagctatacttgaagaaccaag |
26648510 |
T |
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| Q |
216 |
agga |
219 |
Q |
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|||| |
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| T |
26648511 |
agga |
26648514 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 94 - 156
Target Start/End: Original strand, 17115339 - 17115401
Alignment:
| Q |
94 |
tcagtttcactcggatatggctgctcaagcagacgctaaagaaacagctgaagaaaaaggaag |
156 |
Q |
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| T |
17115339 |
tcagtttcactccgatatggctgctaaagcagaagctatggaaacagttgaagggaaaggaag |
17115401 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 40; Significance: 0.00000000000009; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 64 - 219
Target Start/End: Complemental strand, 26353786 - 26353631
Alignment:
| Q |
64 |
caacaatgtaactgctgcgcagcaatattctcagtttcactcggatatggctgctcaagcagacgctaaagaaacagctgaagaaaaaggaagggaagca |
163 |
Q |
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|||||||||||||| | || ||||| || ||||||| | ||||||| ||||||||||||| ||||||||||| | ||||| | ||||||| ||| | |
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| T |
26353786 |
caacaatgtaactgttacggagcaagatcttcagtttttcccggatatttctgctcaagcagaagctaaagaaacggttgaaggacaaggaagaaaagaa |
26353687 |
T |
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| Q |
164 |
agagatgatgaagttatggttttgttaaaagtggaatgcatgaagaatcaagagga |
219 |
Q |
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|| ||| ||||| || |||||| |||||||| | ||| | ||||| |||||||||| |
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| T |
26353686 |
agtgatcatgaacttgtggtttggttaaaagagcaatacttgaaggatcaagagga |
26353631 |
T |
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