View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10821_low_6 (Length: 454)
Name: NF10821_low_6
Description: NF10821
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10821_low_6 |
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| [»] scaffold0072 (1 HSPs) |
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Alignment Details
Target: scaffold0072 (Bit Score: 44; Significance: 7e-16; HSPs: 1)
Name: scaffold0072
Description:
Target: scaffold0072; HSP #1
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 109 - 248
Target Start/End: Original strand, 43471 - 43610
Alignment:
| Q |
109 |
agtcaagataagcatccaattgcgtatttctctaagaaattgaatatttctatgcaacacaaatctgcctatgtcagagagctttatgcagttactgagg |
208 |
Q |
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| T |
43471 |
agtcaagataagcatcccattgcttacttttcaaagaaacttgctccttctatgcaacataaatctgcgtatgtgagggaattatatgcagtcactgaag |
43570 |
T |
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| Q |
209 |
ctatggctaaatttagacactatattctgggtcataaatt |
248 |
Q |
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| T |
43571 |
ctatggcaaaattcagacactatattctaggccataaatt |
43610 |
T |
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Target: chr7 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 55 - 266
Target Start/End: Original strand, 7729908 - 7730119
Alignment:
| Q |
55 |
aagccattcattctagagacagatgcttctggtactggcattggtgctattttgagtcaagataagcatccaattgcgtatttctctaagaaattgaata |
154 |
Q |
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| T |
7729908 |
aagcctttcattctagagacagacgcatccgaaacaagcattggtgccatactcagtcaggataagcccccaattgcttacttctcaaagaaattaaact |
7730007 |
T |
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| Q |
155 |
tttctatgcaacacaaatctgcctatgtcagagagctttatgcagttactgaggctatggctaaatttagacactatattctgggtcataaatttatcat |
254 |
Q |
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| T |
7730008 |
cctctatgcaaaagaaatctgcctatgtgagagaaatttatttagtaccagaagcaatggccaaattcagacattatattctgggtcacaaagttattat |
7730107 |
T |
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| Q |
255 |
cagaactgatca |
266 |
Q |
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| T |
7730108 |
acgaactgatca |
7730119 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 291 - 324
Target Start/End: Complemental strand, 8972610 - 8972577
Alignment:
| Q |
291 |
tcaaactattcaaaccccagaacaacaaaaatgg |
324 |
Q |
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| T |
8972610 |
tcaaactattcaaaccccagaacaacaaaaatgg |
8972577 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 37; Significance: 0.00000000001; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 301 - 401
Target Start/End: Original strand, 10995616 - 10995716
Alignment:
| Q |
301 |
caaaccccagaacaacaaaaatggttgcataagtttttgggatttgatttcactattgaatataagccaggcaaggataatattgctgctgatgccttgt |
400 |
Q |
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| T |
10995616 |
caaactccagaacaacaagcatggttacacaagtttattggctttgattttcatattgaatacaagccaggcatggataacattccagctgatgccttgt |
10995715 |
T |
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| Q |
401 |
c |
401 |
Q |
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| T |
10995716 |
c |
10995716 |
T |
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