View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10821_low_61 (Length: 241)
Name: NF10821_low_61
Description: NF10821
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10821_low_61 |
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Alignment Details
Target: chr4 (Bit Score: 210; Significance: 1e-115; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 210; E-Value: 1e-115
Query Start/End: Original strand, 11 - 224
Target Start/End: Original strand, 49352838 - 49353051
Alignment:
| Q |
11 |
aattgcatgatttggtgcatgatctttcattgtatgttgcaagagatgagtttcaattgttgaaatttcataatgaaaatatacccgagaatgtccttca |
110 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
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| T |
49352838 |
aattgcatgatttggtgcatgatctttcattgtatgttgcaagagatgagtttcaattgttgaaatttcataatgaaaatatactcgagaatgtccttca |
49352937 |
T |
|
| Q |
111 |
tctgtcatttcttaaaaatgatttgcttggcctaacgccggttcctactggcctgagaaccttgatatttcctaagggagccaacaatgaagctttcttg |
210 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
49352938 |
tctgtcatttcttaaaaatgatttgcttggcctaacgccggttcctactggcctgagaaccttgatatttcctaagggagccaacaatgaagctttcttg |
49353037 |
T |
|
| Q |
211 |
aaaactttggtgtc |
224 |
Q |
| |
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|||||||||||||| |
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| T |
49353038 |
aaaactttggtgtc |
49353051 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 143; E-Value: 3e-75
Query Start/End: Original strand, 6 - 220
Target Start/End: Original strand, 49341455 - 49341669
Alignment:
| Q |
6 |
atttgaattgcatgatttggtgcatgatctttcattgtatgttgcaagagatgagtttcaattgttgaaatttcataatgaaaatatacccgagaatgtc |
105 |
Q |
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|||| ||||||||||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |||||||||| |
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| T |
49341455 |
atttaaattgcatgatttagtgcatgatctctcattgtatgttgcaagagatgagtttcaattgttgaaatttcatgatgaaaatatattcgagaatgtc |
49341554 |
T |
|
| Q |
106 |
cttcatctgtcatttcttaaaaatgatttgcttggcctaacgccggttcctactggcctgagaaccttgatatttcctaagggagccaacaatgaagctt |
205 |
Q |
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|||||| |||||||| ||||||||||||||||||||||||| | |||||||| || ||||||||| || ||||||| |||||||| ||||||||||||| |
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| T |
49341555 |
cttcatttgtcatttattaaaaatgatttgcttggcctaacacgagttcctacaggtctgagaaccatgctatttcccaagggagctaacaatgaagctt |
49341654 |
T |
|
| Q |
206 |
tcttgaaaactttgg |
220 |
Q |
| |
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|||||||||| |||| |
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| T |
49341655 |
tcttgaaaacattgg |
49341669 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 113; E-Value: 2e-57
Query Start/End: Original strand, 13 - 221
Target Start/End: Original strand, 19030799 - 19031007
Alignment:
| Q |
13 |
ttgcatgatttggtgcatgatctttcattgtatgttgcaagagatgagtttcaattgttgaaatttcataatgaaaatatacccgagaatgtccttcatc |
112 |
Q |
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||||||||||| ||||| |||||| ||||||||||||||| |||||||||||| ||||||||||||||||||||||||||| | |||||| | ||||||| |
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| T |
19030799 |
ttgcatgatttagtgcacgatcttgcattgtatgttgcaaaagatgagtttcagttgttgaaatttcataatgaaaatatatcagagaatattcttcatc |
19030898 |
T |
|
| Q |
113 |
tgtcatttcttaaaaatgatttgcttggcctaacgccggttcctactggcctgagaaccttgatatttcctaagggagccaacaatgaagctttcttgaa |
212 |
Q |
| |
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|||||||| || ||||||||||||||||| ||| || |||||||||| || ||||| | ||||||||||||||||||||| |||||||||||||||| |
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| T |
19030899 |
tgtcatttattgaaaatgatttgcttggcaaaacaccaattcctactggtctaagaactatcatatttcctaagggagccaacgatgaagctttcttgaa |
19030998 |
T |
|
| Q |
213 |
aactttggt |
221 |
Q |
| |
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| |||||| |
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| T |
19030999 |
cattttggt |
19031007 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 128; Significance: 3e-66; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 128; E-Value: 3e-66
Query Start/End: Original strand, 5 - 220
Target Start/End: Complemental strand, 32783437 - 32783222
Alignment:
| Q |
5 |
catttgaattgcatgatttggtgcatgatctttcattgtatgttgcaagagatgagtttcaattgttgaaatttcataatgaaaatatacccgagaatgt |
104 |
Q |
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||||| ||||||||||||| |||||||||||| || ||||||||||||||||||||||||||||| | ||||||||||||||||||||| ||||||||| |
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| T |
32783437 |
catttaaattgcatgatttagtgcatgatcttgcagtgtatgttgcaagagatgagtttcaattgattgaatttcataatgaaaatatactcgagaatgt |
32783338 |
T |
|
| Q |
105 |
ccttcatctgtcatttcttaaaaatgatttgcttggcctaacgccggttcctactggcctgagaaccttgatatttcctaagggagccaacaatgaagct |
204 |
Q |
| |
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|||||||||||||||| |||||||||||||||||||| |||| || ||||||||||| |||||||| || |||||||| ||| ||||||| || ||||| |
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| T |
32783337 |
ccttcatctgtcatttattaaaaatgatttgcttggcgtaacaccagttcctactggtctgagaactatgctatttcctgaggaagccaacgataaagct |
32783238 |
T |
|
| Q |
205 |
ttcttgaaaactttgg |
220 |
Q |
| |
|
|| || |||||||||| |
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| T |
32783237 |
tttttaaaaactttgg |
32783222 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 64; Significance: 4e-28; HSPs: 4)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 5 - 140
Target Start/End: Original strand, 29744188 - 29744323
Alignment:
| Q |
5 |
catttgaattgcatgatttggtgcatgatctttcattgtatgttgcaagagatgagtttcaattgttgaaatttcataatgaaaatatacccgagaatgt |
104 |
Q |
| |
|
||||| ||||||||||||| |||||||||||| | | ||||||||||||||| ||||||||||||| ||||| ||||||||||||||| |||||||| |
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| T |
29744188 |
catttaaattgcatgatttagtgcatgatcttgccctatatgttgcaagagattagtttcaattgttaaaattccataatgaaaatataattgagaatgt |
29744287 |
T |
|
| Q |
105 |
ccttcatctgtcatttcttaaaaatgatttgcttgg |
140 |
Q |
| |
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|| ||| |||||||| || ||||||||||||||| |
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| T |
29744288 |
tctccatttgtcatttactacaaatgatttgcttgg |
29744323 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 6 - 140
Target Start/End: Original strand, 29751222 - 29751356
Alignment:
| Q |
6 |
atttgaattgcatgatttggtgcatgatctttcattgtatgttgcaagagatgagtttcaattgttgaaatttcataatgaaaatatacccgagaatgtc |
105 |
Q |
| |
|
|||| ||||||||||||| |||||||||||| | | ||||||||||||||||||||||||||| ||||||| ||||||||||||||| ||||||| |
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| T |
29751222 |
atttaaattgcatgatttagtgcatgatcttgccctatatgttgcaagagatgagtttcaattgctgaaattccataatgaaaatataattaagaatgtt |
29751321 |
T |
|
| Q |
106 |
cttcatctgtcatttcttaaaaatgatttgcttgg |
140 |
Q |
| |
|
|| ||| |||||||| || ||||||||| ||||| |
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|
| T |
29751322 |
ctccatttgtcatttactacaaatgatttacttgg |
29751356 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 6 - 140
Target Start/End: Complemental strand, 29602072 - 29601938
Alignment:
| Q |
6 |
atttgaattgcatgatttggtgcatgatctttcattgtatgttgcaagagatgagtttcaattgttgaaatttcataatgaaaatatacccgagaatgtc |
105 |
Q |
| |
|
|||| ||||||||||||| |||||||||||| | | |||||||| |||||||||||||||||| ||||| | ||||||||||||||| ||||||| |
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|
| T |
29602072 |
atttaaattgcatgatttagtgcatgatcttgccctatatgttgccagagatgagtttcaattgctgaaactccataatgaaaatataattaagaatgtt |
29601973 |
T |
|
| Q |
106 |
cttcatctgtcatttcttaaaaatgatttgcttgg |
140 |
Q |
| |
|
|| ||| |||||||| || ||||||||| ||||| |
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|
| T |
29601972 |
ctccatttgtcatttactacaaatgatttacttgg |
29601938 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 16 - 52
Target Start/End: Complemental strand, 35933824 - 35933788
Alignment:
| Q |
16 |
catgatttggtgcatgatctttcattgtatgttgcaa |
52 |
Q |
| |
|
|||||||||||||| |||||| ||||||||||||||| |
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|
| T |
35933824 |
catgatttggtgcacgatcttgcattgtatgttgcaa |
35933788 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 38; Significance: 0.000000000001; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 11 - 140
Target Start/End: Original strand, 35158345 - 35158474
Alignment:
| Q |
11 |
aattgcatgatttggtgcatgatctttcattgtatgttgcaagagatgagtttcaattgttgaaatttcataatgaaaatatacccgagaatgtccttca |
110 |
Q |
| |
|
||||||| ||| | |||||||| ||| ||||||||||| ||||||| ||||||||||||||||| | |||| ||| |||||| | || |||| | | || |
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| T |
35158345 |
aattgcacgatctagtgcatgaccttgcattgtatgtttcaagagacgagtttcaattgttgaactcccatagtgacaatatatctgaaaatgccttaca |
35158444 |
T |
|
| Q |
111 |
tctgtcatttcttaaaaatgatttgcttgg |
140 |
Q |
| |
|
| |||||||| ||||||| ||||| |||| |
|
|
| T |
35158445 |
tttgtcatttactaaaaattatttgtttgg |
35158474 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 16 - 50
Target Start/End: Complemental strand, 18125008 - 18124974
Alignment:
| Q |
16 |
catgatttggtgcatgatctttcattgtatgttgc |
50 |
Q |
| |
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||||||||||| ||||||||||||||||||||||| |
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| T |
18125008 |
catgatttggtacatgatctttcattgtatgttgc |
18124974 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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