View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF10821_low_64 (Length: 240)
Name: NF10821_low_64
Description: NF10821
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10821_low_64 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 199; Significance: 1e-108; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 199; E-Value: 1e-108
Query Start/End: Original strand, 19 - 225
Target Start/End: Complemental strand, 50580468 - 50580262
Alignment:
| Q |
19 |
ggagttggttggaatgaagaagacattggtcttttacaaaggcagagctcctcgaggagagaaaagtaattgggtcatgcatgaataccgtattcactct |
118 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
50580468 |
ggagttggttggaatgaagaagacattggtcttttacaaaggcagagctcctcgaggagagaaaagtaattgggtcatgcatgaataccgtattcactct |
50580369 |
T |
|
| Q |
119 |
aaatccagctttagaacaaacaaggtatgtagtataatatacaggcatagatttatgacaataattaagtcgttaacttactgataatgtgtttgaattt |
218 |
Q |
| |
|
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |
|
|
| T |
50580368 |
aaatccacctttagaacaaacaaggtatgtagtataatatacaggcatagatttatgacaataattaagtcgttagcttactgataatgtgtttgaattt |
50580269 |
T |
|
| Q |
219 |
tacatct |
225 |
Q |
| |
|
||||||| |
|
|
| T |
50580268 |
tacatct |
50580262 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 26 - 105
Target Start/End: Complemental strand, 11462987 - 11462908
Alignment:
| Q |
26 |
gttggaatgaagaagacattggtcttttacaaaggcagagctcctcgaggagagaaaagtaattgggtcatgcatgaata |
105 |
Q |
| |
|
|||||||||||||| || | || || |||||||| ||||| ||| ||||||||||||||||||||| ||||||||||| |
|
|
| T |
11462987 |
gttggaatgaagaaaactcttgttttctacaaaggaagagcacctaaaggagagaaaagtaattgggtaatgcatgaata |
11462908 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 53; Significance: 2e-21; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 26 - 146
Target Start/End: Original strand, 1059333 - 1059453
Alignment:
| Q |
26 |
gttggaatgaagaagacattggtcttttacaaaggcagagctcctcgaggagagaaaagtaattgggtcatgcatgaataccgtattcactctaaatcca |
125 |
Q |
| |
|
||||| ||||||||||| ||||| ||||||||||| | |||||| |||||||||||| || ||||| ||||||||||||||||| || || ||||||| |
|
|
| T |
1059333 |
gttggtatgaagaagactttggttttttacaaaggtcgggctcctagaggagagaaaaccaactgggttatgcatgaataccgtatccattccaaatcca |
1059432 |
T |
|
| Q |
126 |
gctttagaacaaacaaggtat |
146 |
Q |
| |
|
| ||||||| |||||||||| |
|
|
| T |
1059433 |
gtattagaaccaacaaggtat |
1059453 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 36; Significance: 0.00000000002; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 22 - 105
Target Start/End: Original strand, 45058993 - 45059076
Alignment:
| Q |
22 |
gttggttggaatgaagaagacattggtcttttacaaaggcagagctcctcgaggagagaaaagtaattgggtcatgcatgaata |
105 |
Q |
| |
|
||||||||| |||||||| || | || || |||||||| ||||| ||| |||||| |||||||||||||||||||||||||| |
|
|
| T |
45058993 |
gttggttggtatgaagaaaactcttgttttctacaaaggaagagcacctaaaggagaaaaaagtaattgggtcatgcatgaata |
45059076 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 30; Significance: 0.00000008; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 27 - 104
Target Start/End: Original strand, 3893374 - 3893451
Alignment:
| Q |
27 |
ttggaatgaagaagacattggtcttttacaaaggcagagctcctcgaggagagaaaagtaattgggtcatgcatgaat |
104 |
Q |
| |
|
||||||||||||| ||| | || || |||||||| ||||||||| ||| || |||| ||||||||||||||||||| |
|
|
| T |
3893374 |
ttggaatgaagaaaacacttgttttctacaaaggaagagctcctaaaggtgaaaaaacaaattgggtcatgcatgaat |
3893451 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 56 - 104
Target Start/End: Complemental strand, 10317671 - 10317623
Alignment:
| Q |
56 |
aaaggcagagctcctcgaggagagaaaagtaattgggtcatgcatgaat |
104 |
Q |
| |
|
||||| |||||||| |||||||||||| ||||||||||||||||||| |
|
|
| T |
10317671 |
aaaggtagagctccaagaggagagaaaaccaattgggtcatgcatgaat |
10317623 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 77 - 105
Target Start/End: Complemental strand, 31606050 - 31606022
Alignment:
| Q |
77 |
gagaaaagtaattgggtcatgcatgaata |
105 |
Q |
| |
|
||||||||||||||||||||||||||||| |
|
|
| T |
31606050 |
gagaaaagtaattgggtcatgcatgaata |
31606022 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University