View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10821_low_68 (Length: 239)
Name: NF10821_low_68
Description: NF10821
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10821_low_68 |
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Alignment Details
Target: chr1 (Bit Score: 196; Significance: 1e-107; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 196; E-Value: 1e-107
Query Start/End: Original strand, 1 - 223
Target Start/End: Complemental strand, 1492858 - 1492631
Alignment:
| Q |
1 |
tattaaatttatgttatacatagaaacctagtatggtcccacacatagtgtaaggtcctttttctatatataacttggtatagtgagatagtagctgtat |
100 |
Q |
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| T |
1492858 |
tattaaatttatgttatacatagaaacctagtatggtcccacacatagtgtaaggtcctttttctatatataacttggtatagtgagatagtagctgtat |
1492759 |
T |
|
| Q |
101 |
acacaaacttcaattgccacttcaattcttatcttatcatatgatagccattttgtatattactttatggttcgtatttactgctctagtga-----gtt |
195 |
Q |
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|||||||||||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| | ||| |
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| T |
1492758 |
acacaaacttcaatggccacttcaattcttatcttatcatatgatagccactttgtatattactttatggttcgtatttactgctctagtaattcctgtt |
1492659 |
T |
|
| Q |
196 |
cttattatattaaaaacagtgaatggaa |
223 |
Q |
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|||||||||||||||||||||||||||| |
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| T |
1492658 |
cttattatattaaaaacagtgaatggaa |
1492631 |
T |
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