View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10821_low_8 (Length: 447)
Name: NF10821_low_8
Description: NF10821
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10821_low_8 |
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Alignment Details
Target: chr3 (Bit Score: 350; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 350; E-Value: 0
Query Start/End: Original strand, 18 - 440
Target Start/End: Original strand, 171762 - 172201
Alignment:
| Q |
18 |
gctttaccaatctatatcatgctacattgtcgactgtttaacgacatagccaccacctttgaatccagagttcaatcctagtaaaacctcgagagcaagc |
117 |
Q |
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| T |
171762 |
gctttaccaatctatatcatgcaacattgtcgactgtttaacgacatagcaaccacctttgaatccagagttcaaacctagtaaaacctcgagagcgagc |
171861 |
T |
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| Q |
118 |
caacttcaaacctttcaacaccctccataactccgccatataagcactacaaaaacccaagaacttttgagaaatcacatccaattaccaccacaccttt |
217 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |||||||||||||||||||||||||||||||| |
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| T |
171862 |
caacttcaaacctttcaacaccctccataactccgccatataagcactacaagaacccaagaacttt-gagaaatcacatccaattaccaccacaccttt |
171960 |
T |
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| Q |
218 |
ctc------------------atccatatgtactcaatttaatccaatcaataagaggaggcacccattaaattcttcgccatataggcacctttcgcta |
299 |
Q |
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||| | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
171961 |
ctctaccattatcctttgacaaaccatatgtactcaatttaatccaatcaataagaggaggcacccattaaattcttcgccatataggcacctttcgcta |
172060 |
T |
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| Q |
300 |
cattttagtagcactcttgtaatcacatcctgccacggtctagatggaagaaaaaatccatcatcatggttggacttattcctccaacatcaaagaaaat |
399 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
172061 |
cattttagtagcactcttgtaatcacatcctgccacggtctagatggaagaaaaaatccatcatcatggttggacttattcctccaacatcaaagaaaat |
172160 |
T |
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| Q |
400 |
ggcaagaagtttcccagaaagctgcccaattattcatctca |
440 |
Q |
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| T |
172161 |
ggcaagaagtttcccagaaagctgcccaattattcatctca |
172201 |
T |
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