View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10821_low_80 (Length: 219)
Name: NF10821_low_80
Description: NF10821
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10821_low_80 |
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Alignment Details
Target: chr3 (Bit Score: 131; Significance: 4e-68; HSPs: 5)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 131; E-Value: 4e-68
Query Start/End: Original strand, 19 - 206
Target Start/End: Complemental strand, 30223064 - 30222872
Alignment:
| Q |
19 |
tctaggaagctcaagccaatttggccccattgtgctctcccttttccttttctttattgatctgaaacatgatgccatcttacaaataagacaaataaac |
118 |
Q |
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| T |
30223064 |
tctaggaagctcaagccaatttggccccattgtgctctcccttttccttttctttattgatctgaaacatgatgccatcttacaaataagacaaataaac |
30222965 |
T |
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| Q |
119 |
tttaggtacatagaaaagtaac--nnnnnnngaaagggaaatagagat---atataatacgctatatcaaatgtttggcatttgcatcattct |
206 |
Q |
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| T |
30222964 |
tttaggtacatagaaaagtaacaaaaaaaaagtaagggaaatagagatatgatataatacgtgatatcaaatgtttggtatttgcatcattct |
30222872 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 127; E-Value: 1e-65
Query Start/End: Original strand, 19 - 206
Target Start/End: Complemental strand, 30230305 - 30230115
Alignment:
| Q |
19 |
tctaggaagctcaagccaatttggccccattgtgctctcccttttccttttctttattgatctgaaacatgatgccatcttacaaataagacaaataaac |
118 |
Q |
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| T |
30230305 |
tctaggaagctcaagccaatttggccccattgtgctctcccttttccttttctttgttgatctgaaacatggtgccatcttacaaataagacaaataaat |
30230206 |
T |
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| Q |
119 |
tttaggtacatagaaaagtaacnnnnnnngaaagggaaatagagatat-at--aatacgctatatcaaatgtttggcatttgcatcattct |
206 |
Q |
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| T |
30230205 |
tttaggtacatagaaaagtaacaaaaaaagaaagggaaatagagatatgatccaatacgtgatatcaaaagtttggcatttgcatcattct |
30230115 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 21 - 117
Target Start/End: Complemental strand, 30201138 - 30201042
Alignment:
| Q |
21 |
taggaagctcaagccaatttggccccattgtgctctcccttttccttttctttattgatctgaaacatgatgccatcttacaaataagacaaataaa |
117 |
Q |
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| T |
30201138 |
taggaagttcaagccaatttggccccattgtgctttccctttttttcttccttgctgatctcaaaaatggtgccatcatacaaacaagtcgaataaa |
30201042 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 19 - 58
Target Start/End: Complemental strand, 30214687 - 30214648
Alignment:
| Q |
19 |
tctaggaagctcaagccaatttggccccattgtgctctcc |
58 |
Q |
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| T |
30214687 |
tctaggaagttcaagccaatttggccccattgtgctctcc |
30214648 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 19 - 58
Target Start/End: Complemental strand, 30227315 - 30227276
Alignment:
| Q |
19 |
tctaggaagctcaagccaatttggccccattgtgctctcc |
58 |
Q |
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| T |
30227315 |
tctaggaagttcaagccaatttggccccattgtgctctcc |
30227276 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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