View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10821_low_83 (Length: 216)
Name: NF10821_low_83
Description: NF10821
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10821_low_83 |
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Alignment Details
Target: chr6 (Bit Score: 199; Significance: 1e-108; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 199; E-Value: 1e-108
Query Start/End: Original strand, 1 - 199
Target Start/End: Original strand, 35046587 - 35046785
Alignment:
| Q |
1 |
ctaatttctgatagatatttagtccctccataatcttagaactccactccatacaacagaacaatataaattgtatcacattgaaaccaaagacagtgcc |
100 |
Q |
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| T |
35046587 |
ctaatttctgatagatatttagtccctccataatcttagaactccactccatacaacagaacaatataaattgtatcacattgaaaccaaagacagtgcc |
35046686 |
T |
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| Q |
101 |
aacaaggtgccaacaatgaagagtagagagcaaatgatcataacccatttcctttgaattattcagcaagtaagagaattcttctcttttagtaatact |
199 |
Q |
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| T |
35046687 |
aacaaggtgccaacaatgaagagtagagagcaaatgatcataacccatttcctttgaattattcagcaagtaagagaattcttctcttttagtaatact |
35046785 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 107; E-Value: 8e-54
Query Start/End: Original strand, 25 - 191
Target Start/End: Original strand, 35000250 - 35000416
Alignment:
| Q |
25 |
cctccataatcttagaactccactccatacaacagaacaatataaattgtatcacattgaaaccaaagacagtgccaacaaggtgccaacaatgaagagt |
124 |
Q |
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| T |
35000250 |
cctccataatattggaactccattccatggaacaaaacaatacaaattgtatcacattgaaaccaaagacagtgacaagaaggagccaacaatgaagaga |
35000349 |
T |
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| Q |
125 |
agagagcaaatgatcataacccatttcctttgaattattcagcaagtaagagaattcttctctttta |
191 |
Q |
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| T |
35000350 |
agagagcaaatggtcataacccatttcctttgaattcttcaacaagtaagagaattcctctctttta |
35000416 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 144 - 191
Target Start/End: Original strand, 15559919 - 15559966
Alignment:
| Q |
144 |
cccatttcctttgaattattcagcaagtaagagaattcttctctttta |
191 |
Q |
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| T |
15559919 |
cccatttcctttgaattcttcagtaggtaagagaattcctctctttta |
15559966 |
T |
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