View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10821_low_84 (Length: 208)
Name: NF10821_low_84
Description: NF10821
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10821_low_84 |
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Alignment Details
Target: chr2 (Bit Score: 168; Significance: 3e-90; HSPs: 10)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 168; E-Value: 3e-90
Query Start/End: Original strand, 8 - 183
Target Start/End: Original strand, 2474159 - 2474334
Alignment:
| Q |
8 |
gaagcagagaagttatttgtggatgaaaaaccaaactacgattatagtagtaactcatgtgttggtggcgaatgcctccattatactcaggtggtttgga |
107 |
Q |
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||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |
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| T |
2474159 |
gaagcagtgaagttatttgtggatgaaaaaccaaactacgattatagtagtaactcatgtgttggtggtgaatgcctccattatactcaggtggtttgga |
2474258 |
T |
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| Q |
108 |
gaaacacaaaacgtattggatgtgccaaagtgaaatgtgataatggaggaacattcattacttgcaattacgaccc |
183 |
Q |
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| T |
2474259 |
gaaacacaaaacgtattggatgtgccaaagtgaaatgtgataatggaggaacattcattacttgcaattacgaccc |
2474334 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 86; E-Value: 3e-41
Query Start/End: Original strand, 26 - 190
Target Start/End: Original strand, 2469903 - 2470070
Alignment:
| Q |
26 |
gtggatgaaaaaccaaactacgattatagtagtaactcatgtgttggtggcgaa---tgcctccattatactcaggtggtttggagaaacacaaaacgta |
122 |
Q |
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|||||||||||||| |||| |||||||||||||| ||||||| | ||| ||| || ||| || |||||||||||||||||||||||| |||| | |
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| T |
2469903 |
gtggatgaaaaaccctactatgattatagtagtaattcatgtgctaatggtgaaatgtgtggccactacactcaggtggtttggagaaacacacaacgga |
2470002 |
T |
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| Q |
123 |
ttggatgtgccaaagtgaaatgtgataatggaggaacattcattacttgcaattacgacccaccaggc |
190 |
Q |
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| T |
2470003 |
ttggatgtgccaaagtgaaatgtaataacggaggaacattcattacttgcaattacgacccaccaggc |
2470070 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 70; E-Value: 9e-32
Query Start/End: Original strand, 85 - 190
Target Start/End: Original strand, 2458016 - 2458121
Alignment:
| Q |
85 |
ccattatactcaggtggtttggagaaacacaaaacgtattggatgtgccaaagtgaaatgtgataatggaggaacattcattacttgcaattacgaccca |
184 |
Q |
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| T |
2458016 |
ccattacactcaggttgtttggagaaacacaaagcgtattggatgtgccaaagtaagatgtaataatggaggcacattcattatttgcaattacgatcca |
2458115 |
T |
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| Q |
185 |
ccaggc |
190 |
Q |
| |
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|||||| |
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| T |
2458116 |
ccaggc |
2458121 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 67; E-Value: 6e-30
Query Start/End: Original strand, 85 - 190
Target Start/End: Complemental strand, 3063405 - 3063297
Alignment:
| Q |
85 |
ccattatactcaggtggtttggagaaacacaaaacgtattggatgtgccaaagtgaaatgtg---ataatggaggaacattcattacttgcaattacgac |
181 |
Q |
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||||||||||||||| |||||||||||| || ||||| |||||||||||||||||| ||||| ||||| |||||||||||||||| |||||||||||| |
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| T |
3063405 |
ccattatactcaggttgtttggagaaactcacaacgtgttggatgtgccaaagtgagatgtgataataatagaggaacattcattacatgcaattacgac |
3063306 |
T |
|
| Q |
182 |
ccaccaggc |
190 |
Q |
| |
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||||||||| |
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| T |
3063305 |
ccaccaggc |
3063297 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 65; E-Value: 9e-29
Query Start/End: Original strand, 58 - 186
Target Start/End: Original strand, 2470962 - 2471090
Alignment:
| Q |
58 |
taactcatgtgttggtggcgaatgcctccattatactcaggtggtttggagaaacacaaaacgtattggatgtgccaaagtgaaatgtgataatggagga |
157 |
Q |
| |
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|||||||||||||||||| ||||| || |||||||| |||||| | ||| ||| || ||||| ||||||||| |||||||| ||||||||||||||| |
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| T |
2470962 |
taactcatgtgttggtggtgaatgtcttcattatacccaggtgatatgggaaaaatcacaacgtgttggatgtggcaaagtgagatgtgataatggaggc |
2471061 |
T |
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| Q |
158 |
acattcattacttgcaattacgacccacc |
186 |
Q |
| |
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|||||||||||||||||||| |||||||| |
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| T |
2471062 |
acattcattacttgcaattatgacccacc |
2471090 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #6
Raw Score: 63; E-Value: 1e-27
Query Start/End: Original strand, 85 - 190
Target Start/End: Original strand, 2462592 - 2462700
Alignment:
| Q |
85 |
ccattatactcaggtggtttggagaaacacaaaacgtattggatgtgccaaagtgaaatgtg---ataatggaggaacattcattacttgcaattacgac |
181 |
Q |
| |
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||||||||| ||||| |||||||||||| || ||||| |||||||||||||||||| ||||| ||||| |||||||||||||||| |||||||||||| |
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| T |
2462592 |
ccattatacccaggttgtttggagaaactcacaacgtgttggatgtgccaaagtgagatgtgataataatagaggaacattcattacatgcaattacgac |
2462691 |
T |
|
| Q |
182 |
ccaccaggc |
190 |
Q |
| |
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||||||||| |
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| T |
2462692 |
ccaccaggc |
2462700 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #7
Raw Score: 63; E-Value: 1e-27
Query Start/End: Original strand, 85 - 190
Target Start/End: Original strand, 2466640 - 2466748
Alignment:
| Q |
85 |
ccattatactcaggtggtttggagaaacacaaaacgtattggatgtgccaaagtgaaatgtg---ataatggaggaacattcattacttgcaattacgac |
181 |
Q |
| |
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||||||||| ||||| |||||||||||| || ||||| |||||||||||||||||| ||||| ||||| |||||||||||||||| |||||||||||| |
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| T |
2466640 |
ccattatacccaggttgtttggagaaactcacaacgtgttggatgtgccaaagtgagatgtgataataatagaggaacattcattacatgcaattacgac |
2466739 |
T |
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| Q |
182 |
ccaccaggc |
190 |
Q |
| |
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||||||||| |
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| T |
2466740 |
ccaccaggc |
2466748 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #8
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 77 - 177
Target Start/End: Original strand, 2486502 - 2486602
Alignment:
| Q |
77 |
gaatgcctccattatactcaggtggtttggagaaacacaaaacgtattggatgtgccaaagtgaaatgtgataatggaggaacattcattacttgcaatt |
176 |
Q |
| |
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||||||| ||||||||||||||| |||||| ||| || |||| ||||||||| ||||||||||||||||||||| || |||| |||||||||||| |
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| T |
2486502 |
gaatgccaccattatactcaggttgtttgggaaaaatcactacgtgttggatgtggcaaagtgaaatgtgataatggtggctcatttgttacttgcaatt |
2486601 |
T |
|
| Q |
177 |
a |
177 |
Q |
| |
|
| |
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|
| T |
2486602 |
a |
2486602 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #9
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 118 - 177
Target Start/End: Original strand, 2478858 - 2478917
Alignment:
| Q |
118 |
acgtattggatgtgccaaagtgaaatgtgataatggaggaacattcattacttgcaatta |
177 |
Q |
| |
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|||| ||||||||| ||||||||||||| ||||||| |||||||| ||||||| ||||| |
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| T |
2478858 |
acgtcttggatgtggcaaagtgaaatgtaataatggtggaacatttgttacttgtaatta |
2478917 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #10
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 118 - 177
Target Start/End: Original strand, 2483362 - 2483421
Alignment:
| Q |
118 |
acgtattggatgtgccaaagtgaaatgtgataatggaggaacattcattacttgcaatta |
177 |
Q |
| |
|
|||| ||||||||| ||||||||||||| ||||||| |||||||| ||||||| ||||| |
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|
| T |
2483362 |
acgtcttggatgtggcaaagtgaaatgtaataatggtggaacatttgttacttgtaatta |
2483421 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 67; Significance: 6e-30; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 67; E-Value: 6e-30
Query Start/End: Original strand, 85 - 190
Target Start/End: Original strand, 18015915 - 18016023
Alignment:
| Q |
85 |
ccattatactcaggtggtttggagaaacacaaaacgtattggatgtgccaaagtgaaatgtg---ataatggaggaacattcattacttgcaattacgac |
181 |
Q |
| |
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||||||||||||||| |||||||||||| || ||||| |||||||||||||||||| ||||| ||||| |||||||||||||||| |||||||||||| |
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| T |
18015915 |
ccattatactcaggttgtttggagaaactcacaacgtgttggatgtgccaaagtgagatgtgataataatagaggaacattcattacatgcaattacgac |
18016014 |
T |
|
| Q |
182 |
ccaccaggc |
190 |
Q |
| |
|
||||||||| |
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|
| T |
18016015 |
ccaccaggc |
18016023 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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