View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10821_low_9 (Length: 437)
Name: NF10821_low_9
Description: NF10821
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10821_low_9 |
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Alignment Details
Target: chr5 (Bit Score: 369; Significance: 0; HSPs: 5)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 369; E-Value: 0
Query Start/End: Original strand, 19 - 432
Target Start/End: Complemental strand, 14289800 - 14289384
Alignment:
| Q |
19 |
ggttcctcgactgtagatttctccaatgactttaagaccctgaattgaaaagaatatcgcttagcatacaatatttgttaaatttcaaattacaaattag |
118 |
Q |
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| T |
14289800 |
ggttcctcgactgtagatttctccaatgactttaagaccctgaattgaaaagaatatcgcttagcgtacaatatttgttaaatttcaaattacaaattag |
14289701 |
T |
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| Q |
119 |
gaaagaaggacaccgtagcatatagagataagtattgtcttagagtccatattaacatatgatgacaaccaaacttgt----cgttagaaataaaataaa |
214 |
Q |
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| T |
14289700 |
gaaagaaggacaccgtagcatatagagataagtattgtctta-agtccatattaacatatgatgacaaccaaacttgttgtccgttagaaaaaaaataga |
14289602 |
T |
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| Q |
215 |
gaacaaagtatgagatagaagtacaacaccttcacatctgttgtataagatctagacaaaaatctggacgtcgttgaaggttccagtcgctcctaatgaa |
314 |
Q |
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| T |
14289601 |
gaacaaagtatgagatagaagtacaacaccttcacatctgttgtataagatctagacaaaaatctggacgtcgttgaaggttccagtcgctcctaatgaa |
14289502 |
T |
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| Q |
315 |
tatttattaatcaacagcagaccattatctaaaaaggaaaatacaaaagataacatcaaaggtgttgggtattgttagttaaaagtcggatttaagggcc |
414 |
Q |
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| T |
14289501 |
tatttattaatcaacagcagaccattatctaaaaaggaaaatacaagagataacatcaaaggtgttgggcattgttagttaaaagtcggatttaagggcc |
14289402 |
T |
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| Q |
415 |
tgtttggtctctgcttct |
432 |
Q |
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| T |
14289401 |
tgtttggtttctgcttct |
14289384 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 134 - 196
Target Start/End: Original strand, 15056684 - 15056746
Alignment:
| Q |
134 |
tagcatatagagataagtattgtcttagagtccatattaacatatgatgacaaccaaacttgt |
196 |
Q |
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| T |
15056684 |
tagcatatagagataaaaattgtcttaaactccatactaacatatgatgacagccaaacttgt |
15056746 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 96 - 196
Target Start/End: Original strand, 14745955 - 14746055
Alignment:
| Q |
96 |
ttaaatttcaaattacaaattaggaaagaaggacaccgtagcatatagagataagtattgtcttagagtccatattaacatatgatgacaaccaaacttg |
195 |
Q |
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| T |
14745955 |
ttaaatttcaaattactaattagaaaagtaggataccatatcatatagagataaatactatcttaaactcgaccttaacatatgatgacaggcaaacttg |
14746054 |
T |
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| Q |
196 |
t |
196 |
Q |
| |
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| T |
14746055 |
t |
14746055 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 27 - 107
Target Start/End: Original strand, 15056591 - 15056672
Alignment:
| Q |
27 |
gactgtagatttctccaatgactttaagaccctgaa-ttgaaaagaatatcgcttagcatacaatatttgttaaatttcaaa |
107 |
Q |
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| T |
15056591 |
gactggagatttctccaatgcctttaaaaccctgaagttgaaaacagtatcacttggcatacaacatatattaaatttcaaa |
15056672 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 313 - 373
Target Start/End: Original strand, 14743158 - 14743218
Alignment:
| Q |
313 |
aatatttattaatcaacagcagaccattatctaaaaaggaaaatacaaaagataacatcaa |
373 |
Q |
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| T |
14743158 |
aatatttattaattaacatcatatgattatctaaaaaggtaaatacaagagataacatcaa |
14743218 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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