View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10822_high_1 (Length: 402)
Name: NF10822_high_1
Description: NF10822
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10822_high_1 |
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Alignment Details
Target: chr3 (Bit Score: 363; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 363; E-Value: 0
Query Start/End: Original strand, 7 - 389
Target Start/End: Complemental strand, 33195458 - 33195076
Alignment:
| Q |
7 |
aagagaaagagagttttggtttagcaattaacattggagattagagagcagatgaagtgaatcagcagtaaatattgtcattattagtaataagtaggga |
106 |
Q |
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| T |
33195458 |
aagagaaagagagttttggtttagcaattaacattagagattagagagcagatgaagtgaatcagcagtaaatattgtcattattagtaataagtaggga |
33195359 |
T |
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| Q |
107 |
ggtagagtggagctttgagggattagatgttctatcaacttgaaaaaccagctaaacgcctctcattagtactgttgatgattatcattcaactactact |
206 |
Q |
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| T |
33195358 |
ggtagagtggagctttgagggattagatgttctatcaacttgaaaaaccagctaaacgcctctcattagtactgttgatgattatcattcaactactatt |
33195259 |
T |
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| Q |
207 |
tgtctaattaaagaaataactatgagttagggaaatgcttatctattcaggacattgatattttgtatatgtgtccctttttatgtatgtagagtttgat |
306 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |||||||||||| |
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| T |
33195258 |
tgtctaattaaagaaataactatgagttagggaaatgcttatctattcaggacattgatattttgtatatgtgtccctttttatatacgtagagtttgat |
33195159 |
T |
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| Q |
307 |
ttgtatgcaatggttagtttacaaaatttatacacatttttaatcacattctagcaaataaatattgtgaaaatgtttgattc |
389 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
33195158 |
ttgtatgcaatggttagtttacaaaatttatacacatttttaatcacattctagcaaataaatattgtgaaaatgttttattc |
33195076 |
T |
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