View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10822_high_10 (Length: 208)

Name: NF10822_high_10
Description: NF10822
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10822_high_10
NF10822_high_10
[»] chr1 (9 HSPs)
chr1 (75-193)||(8016214-8016332)
chr1 (137-193)||(46252677-46252733)
chr1 (135-172)||(1565551-1565588)
chr1 (139-192)||(5886990-5887043)
chr1 (55-84)||(8016160-8016189)
chr1 (157-193)||(3223706-3223742)
chr1 (137-193)||(10809364-10809420)
chr1 (155-191)||(29635384-29635420)
chr1 (131-183)||(38503470-38503522)
[»] chr6 (2 HSPs)
chr6 (137-193)||(3528822-3528878)
chr6 (145-193)||(281843-281891)
[»] chr7 (1 HSPs)
chr7 (138-193)||(25670581-25670636)
[»] chr5 (1 HSPs)
chr5 (137-191)||(11707074-11707128)
[»] chr2 (3 HSPs)
chr2 (137-183)||(35379021-35379067)
chr2 (137-191)||(44443340-44443394)
chr2 (137-193)||(43199779-43199835)
[»] chr8 (1 HSPs)
chr8 (137-193)||(7714261-7714317)
[»] chr3 (1 HSPs)
chr3 (137-189)||(41633379-41633431)


Alignment Details
Target: chr1 (Bit Score: 99; Significance: 5e-49; HSPs: 9)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 99; E-Value: 5e-49
Query Start/End: Original strand, 75 - 193
Target Start/End: Original strand, 8016214 - 8016332
Alignment:
Q  75 aagccatttttctataacaaaaaataaaatggagttattggtttcatatgagtgtctgttatctatcttggagagctcaggaaaataagctgaaaacaag 174  Q
    |||||||||||||||||||||||||||||||||||||||| |||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||    
T  8016214 aagccatttttctataacaaaaaataaaatggagttattgttttcatatgagtttctgttatctatcttggagagcttaggaaaataagctgaaaacaag 8016313  T
Q  175 ttataaacatttcataagt 193  Q
    |||| ||||| ||||||||    
T  8016314 ttatgaacatgtcataagt 8016332  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 137 - 193
Target Start/End: Complemental strand, 46252733 - 46252677
Alignment:
Q  137 ctatcttggagagctcaggaaaataagctgaaaacaagttataaacatttcataagt 193  Q
    ||||||||||||||| | |||||||| |||||||||| |||| ||||| ||||||||    
T  46252733 ctatcttggagagcttatgaaaataacctgaaaacaacttatgaacatgtcataagt 46252677  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 135 - 172
Target Start/End: Complemental strand, 1565588 - 1565551
Alignment:
Q  135 atctatcttggagagctcaggaaaataagctgaaaaca 172  Q
    |||||| |||||||||||| ||||||||||||||||||    
T  1565588 atctattttggagagctcatgaaaataagctgaaaaca 1565551  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 139 - 192
Target Start/End: Complemental strand, 5887043 - 5886990
Alignment:
Q  139 atcttggagagctcaggaaaataagctgaaaacaagttataaacatttcataag 192  Q
    |||||||||| || | ||||||||||||||||||| |||| ||||| |||||||    
T  5887043 atcttggagaacttacgaaaataagctgaaaacaacttatgaacatgtcataag 5886990  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 55 - 84
Target Start/End: Original strand, 8016160 - 8016189
Alignment:
Q  55 catcaaagctttaacatgcaaagccatttt 84  Q
    ||||||||||||||||||||||||||||||    
T  8016160 catcaaagctttaacatgcaaagccatttt 8016189  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 157 - 193
Target Start/End: Original strand, 3223706 - 3223742
Alignment:
Q  157 aaataagctgaaaacaagttataaacatttcataagt 193  Q
    ||||||||||||||||| |||||||||| ||||||||    
T  3223706 aaataagctgaaaacaacttataaacatgtcataagt 3223742  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 137 - 193
Target Start/End: Original strand, 10809364 - 10809420
Alignment:
Q  137 ctatcttggagagctcaggaaaataagctgaaaacaagttataaacatttcataagt 193  Q
    |||| ||||||| || | ||||||||||||||||||  |||||||||| ||||||||    
T  10809364 ctatattggagaacttatgaaaataagctgaaaacatattataaacatgtcataagt 10809420  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 155 - 191
Target Start/End: Original strand, 29635384 - 29635420
Alignment:
Q  155 gaaaataagctgaaaacaagttataaacatttcataa 191  Q
    ||||||||||||||||||| |||||||||| ||||||    
T  29635384 gaaaataagctgaaaacaacttataaacatgtcataa 29635420  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 131 - 183
Target Start/End: Complemental strand, 38503522 - 38503470
Alignment:
Q  131 tgttatctatcttggagagctcaggaaaataagctgaaaacaagttataaaca 183  Q
    ||||| |||||||||||| || | ||||||||||||||||||| |||| ||||    
T  38503522 tgttagctatcttggagaacttatgaaaataagctgaaaacaacttatgaaca 38503470  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 33; Significance: 0.000000001; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 137 - 193
Target Start/End: Original strand, 3528822 - 3528878
Alignment:
Q  137 ctatcttggagagctcaggaaaataagctgaaaacaagttataaacatttcataagt 193  Q
    ||||||||||||||| | ||||||||| ||||||||||||||  |||| ||||||||    
T  3528822 ctatcttggagagcttatgaaaataagatgaaaacaagttatggacatgtcataagt 3528878  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 145 - 193
Target Start/End: Complemental strand, 281891 - 281843
Alignment:
Q  145 gagagctcaggaaaataagctgaaaacaagttataaacatttcataagt 193  Q
    ||||||||| | ||||||||||||||||| ||||| |||| ||||||||    
T  281891 gagagctcatggaaataagctgaaaacaacttatagacatgtcataagt 281843  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 32; Significance: 0.000000004; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 138 - 193
Target Start/End: Complemental strand, 25670636 - 25670581
Alignment:
Q  138 tatcttggagagctcaggaaaataagctgaaaacaagttataaacatttcataagt 193  Q
    ||||||||||||||   ||||||||||||||||||| |||| ||||| ||||||||    
T  25670636 tatcttggagagcttgtgaaaataagctgaaaacaatttattaacatgtcataagt 25670581  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 137 - 191
Target Start/End: Original strand, 11707074 - 11707128
Alignment:
Q  137 ctatcttggagagctcaggaaaataagctgaaaacaagttataaacatttcataa 191  Q
    |||||||| ||||||   ||||||||||||||||||| |||||||||| ||||||    
T  11707074 ctatcttgtagagcttttgaaaataagctgaaaacaacttataaacatgtcataa 11707128  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 31; Significance: 0.00000002; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 137 - 183
Target Start/End: Complemental strand, 35379067 - 35379021
Alignment:
Q  137 ctatcttggagagctcaggaaaataagctgaaaacaagttataaaca 183  Q
    ||||||||||||||| | ||||||||||||||||||| |||| ||||    
T  35379067 ctatcttggagagcttatgaaaataagctgaaaacaacttatgaaca 35379021  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 137 - 191
Target Start/End: Original strand, 44443340 - 44443394
Alignment:
Q  137 ctatcttggagagctcaggaaaataagctgaaaacaagttataaacatttcataa 191  Q
    ||||||| ||||||  | ||||||||||||||||||| |||| ||||||||||||    
T  44443340 ctatctttgagagcatatgaaaataagctgaaaacaacttatgaacatttcataa 44443394  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 137 - 193
Target Start/End: Complemental strand, 43199835 - 43199779
Alignment:
Q  137 ctatcttggagagctcaggaaaataagctgaaaacaagttataaacatttcataagt 193  Q
    ||||||||||| ||| | |||| |||||||||||||| |||||||||| ||| ||||    
T  43199835 ctatcttggagggcttatgaaattaagctgaaaacaacttataaacatgtcacaagt 43199779  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 137 - 193
Target Start/End: Original strand, 7714261 - 7714317
Alignment:
Q  137 ctatcttggagagctcaggaaaataagctgaaaacaagttataaacatttcataagt 193  Q
    ||||||||||||||||| ||||||||| ||||||||  | ||  |||||||||||||    
T  7714261 ctatcttggagagctcatgaaaataagttgaaaacagctcatcgacatttcataagt 7714317  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 137 - 189
Target Start/End: Original strand, 41633379 - 41633431
Alignment:
Q  137 ctatcttggagagctcaggaaaataagctgaaaacaagttataaacatttcat 189  Q
    |||| |||||||||| | ||||||||||||||||||| ||||| |||| ||||    
T  41633379 ctattttggagagcttatgaaaataagctgaaaacaatttatagacatgtcat 41633431  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University