View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10822_high_4 (Length: 328)
Name: NF10822_high_4
Description: NF10822
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10822_high_4 |
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| [»] chr4 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 271; Significance: 1e-151; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 271; E-Value: 1e-151
Query Start/End: Original strand, 1 - 328
Target Start/End: Original strand, 54656843 - 54657165
Alignment:
| Q |
1 |
atatatttttagttgactataatgattgcgtcnnnnnnngaagagactatatatgaagacgagcaaacagttcacttgaaatgcattactgtatttcaca |
100 |
Q |
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| T |
54656843 |
atatatttttagttgactataatgattgcgtcaaaaaaagaagagactatatatgaagacgagcaaacagttcacttgaaatgcatta-----tttcaca |
54656937 |
T |
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| Q |
101 |
tggtggcatctcaatccagtccaaatgcacattccattacatgctaaatgtattaattattccaaaatttgtagttataagagccacactaactattgat |
200 |
Q |
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| T |
54656938 |
tggtggcatctcaatccagtccaaatgcacattccattacatgctaaatgtattaattattccaaaatttgtagttataagagccacactaactattgat |
54657037 |
T |
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| Q |
201 |
caactagctagcaaatctctgcatatctacgagatcaagaaacagttttatatttcagatgattgaaagaaattattatacacatctgataagtttgctt |
300 |
Q |
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||| ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |
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| T |
54657038 |
caagtaggtagcaaatctctgcatatctacgagatcaagaaacagttttatatttcagatgattgaaagaaattattatacacttctgataagtttgctt |
54657137 |
T |
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| Q |
301 |
cagcgatgaaaatgcaggaaatgtgcgt |
328 |
Q |
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| T |
54657138 |
cagcgatgaaaatgtaggaaatgtgcgt |
54657165 |
T |
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