View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF10822_low_1 (Length: 459)
Name: NF10822_low_1
Description: NF10822
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10822_low_1 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 355; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 355; E-Value: 0
Query Start/End: Original strand, 18 - 451
Target Start/End: Original strand, 31246163 - 31246597
Alignment:
| Q |
18 |
agaaatacaggagatgacaacattgagggctgaagctttagcacaaatgggtcgccttaaattgctcatcctgtggaatttgaatttttcaggaaatctc |
117 |
Q |
| |
|
||||||||||| ||||||||||||||| |||||||||||||||||||| ||||||||||||||||||| ||||||||||||||||| ||||||| |||| |
|
|
| T |
31246163 |
agaaatacaggggatgacaacattgagaactgaagctttagcacaaatgagtcgccttaaattgctcatgctgtggaatttgaatttctcaggaagtctc |
31246262 |
T |
|
| Q |
118 |
aattttctttctagtcatttggggtatctctgttgggataaatatcctttcacttgtttgccatcaagttttcagccggataatcttgttgaactgatac |
217 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |||||||||||| | | |
|
|
| T |
31246263 |
aattttctttctagtcatttggggtatctctgttgggataaatatcctttcacttgtttgccatcaagtttccagccggataaacttgttgaactggtcc |
31246362 |
T |
|
| Q |
218 |
tacctcgtagcaacatcaggcaactatgggagggcacaaaggtactataaacatggttatgagcctttgtttttctttttctgatgaacacataagaagt |
317 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |
|
|
| T |
31246363 |
tacctcgtagcaacatcaggcaactatgggagggcacaaaggtaatataaacatggttatgagcctttgtttatctttttctgatgaacacataagaagt |
31246462 |
T |
|
| Q |
318 |
gtttatctcttaatattccttctttcactacagtttgttaaataaatgaattaaagtttaaatatgattattaatttttctcttt-catttatcattgtc |
416 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
|
|
| T |
31246463 |
gtttatctcttaatattccttctttcactacagttagttaaataaatgaattaaagtttaaatatgattattaatttttctctttccatttatcattgtc |
31246562 |
T |
|
| Q |
417 |
tgcagcctctacataatttgacacatattcatctc |
451 |
Q |
| |
|
||||| | |||||||||||||||||||| ||||| |
|
|
| T |
31246563 |
tgcagtgtttacataatttgacacatattgatctc |
31246597 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 130; Significance: 3e-67; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 130; E-Value: 3e-67
Query Start/End: Original strand, 31 - 264
Target Start/End: Original strand, 13610230 - 13610463
Alignment:
| Q |
31 |
atgacaacattgagggctgaagctttagcacaaatgggtcgccttaaattgctcatcctgtggaatttgaatttttcaggaaatctcaattttctttcta |
130 |
Q |
| |
|
|||||||||||||||||||||||||||||| | ||| ||||||||||||||||| ||| | |||||||||| ||||||| ||||||||||||||| | |
|
|
| T |
13610230 |
atgacaacattgagggctgaagctttagcaaagatgactcgccttaaattgctcaagctgcgtgatttgaatttctcaggaagtctcaattttctttcaa |
13610329 |
T |
|
| Q |
131 |
gtcatttggggtatctctgttgggataaatatcctttcacttgtttgccatcaagttttcagccggataatcttgttgaactgatactacctcgtagcaa |
230 |
Q |
| |
|
|| | ||||||||||| | |||||| |||||||||||||| ||||||||||||||||||||||||||||| ||||||||| |||| |||| | |||||| |
|
|
| T |
13610330 |
gtgaattggggtatctatattgggaaaaatatcctttcacatgtttgccatcaagttttcagccggataaacttgttgaattgatcctacgttctagcaa |
13610429 |
T |
|
| Q |
231 |
catcaggcaactatgggagggcacaaaggtacta |
264 |
Q |
| |
|
|||||||||||||||| |||| |||||||||||| |
|
|
| T |
13610430 |
catcaggcaactatggaagggaacaaaggtacta |
13610463 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 366 - 451
Target Start/End: Original strand, 13614278 - 13614364
Alignment:
| Q |
366 |
aattaaagtttaaatatgattattaatttttctctttc-atttatcattgtctgcagcctctacataatttgacacatattcatctc |
451 |
Q |
| |
|
|||||| | ||||||||||||||||| |||||||||| | | | ||||||||||||||||| || ||||||||||||||| ||||| |
|
|
| T |
13614278 |
aattaatgcttaaatatgattattaacctttctctttctactgaccattgtctgcagcctcttcacaatttgacacatattgatctc |
13614364 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University