View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF10822_low_11 (Length: 274)
Name: NF10822_low_11
Description: NF10822
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10822_low_11 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 220; Significance: 1e-121; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 220; E-Value: 1e-121
Query Start/End: Original strand, 11 - 258
Target Start/End: Complemental strand, 17243560 - 17243313
Alignment:
| Q |
11 |
aacctgtgataacatccaattcaagaacattggagatttgtggtccaaatctaaaagtttgaccaccaatcccagcattagagagagtgccaccaacagt |
110 |
Q |
| |
|
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| || ||||| |||||||||||||||||||||||||||| |
|
|
| T |
17243560 |
aacctgtaataacatccaattcaagaacattggagatttgtggtccaaatctaaaagtttggcccccaattccagcattagagagagtgccaccaacaga |
17243461 |
T |
|
| Q |
111 |
caaatacaagtaatcagtccaagagagaggtgtgagtccatgcttaagtgtagcattcaaaacatcaatccacaattgttctccacccacaccaacataa |
210 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
|
|
| T |
17243460 |
caaatacaagtaatcagtccaagagagaggtgtgagtccatgcttaagtgtagcattcaaaacatcaatccacaattgttctccacccacatcaacataa |
17243361 |
T |
|
| Q |
211 |
caacctaattgatttttcacatcacaatcagatactacaattccagac |
258 |
Q |
| |
|
||||||||| |||||||||||||||||||||||||||||||||||||| |
|
|
| T |
17243360 |
caacctaatggatttttcacatcacaatcagatactacaattccagac |
17243313 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 67 - 209
Target Start/End: Complemental strand, 17275707 - 17275565
Alignment:
| Q |
67 |
gtttgaccaccaatcccagcattagagagagtgccaccaacagtcaaatacaagtaatcagtccaagagagaggtgtgagtccatgcttaagtgtagcat |
166 |
Q |
| |
|
||||| |||| ||| |||||||||||||| || || |||| ||| || || | |||||||||||||| | ||||| ||||||| || |||||| ||| |
|
|
| T |
17275707 |
gtttgtccactaataccagcattagagagtgtccctccaatagttaagtaaagataatcagtccaagaaacaggtgcaagtccatactcaagtgtttcat |
17275608 |
T |
|
| Q |
167 |
tcaaaacatcaatccacaattgttctccacccacaccaacata |
209 |
Q |
| |
|
||| ||||||||||| | |||||| || || ||| ||||||| |
|
|
| T |
17275607 |
acaacacatcaatccatagttgttcccctccaacatcaacata |
17275565 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 57; Significance: 7e-24; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 21 - 149
Target Start/End: Original strand, 52454528 - 52454656
Alignment:
| Q |
21 |
aacatccaattcaagaacattggagatttgtggtccaaatctaaaagtttgaccaccaatcccagcattagagagagtgccaccaacagtcaaatacaag |
120 |
Q |
| |
|
||||||||||||| |||||||||| ||||| || ||||||| || ||||| |||| ||| ||||||||||||||||| |||||||| | |||||||| |
|
|
| T |
52454528 |
aacatccaattcatgaacattggaaatttgaggaccaaatcggaaggtttgtccactaataccagcattagagagagttccaccaaccgataaatacaaa |
52454627 |
T |
|
| Q |
121 |
taatcagtccaagagagaggtgtgagtcc |
149 |
Q |
| |
|
|||||||||||||| || ||||| ||||| |
|
|
| T |
52454628 |
taatcagtccaagaaagtggtgtaagtcc |
52454656 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 124 - 209
Target Start/End: Complemental strand, 52443489 - 52443404
Alignment:
| Q |
124 |
tcagtccaagagagaggtgtgagtccatgcttaagtgtagcattcaaaacatcaatccacaattgttctccacccacaccaacata |
209 |
Q |
| |
|
||||||||||| | ||||| |||||||| | |||||| |||| ||||||||||||||| | ||||||||| || ||| ||||||| |
|
|
| T |
52443489 |
tcagtccaagaaacaggtgcaagtccatgttcaagtgttgcatacaaaacatcaatccatagttgttctcctccaacatcaacata |
52443404 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 36; Significance: 0.00000000002; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 67 - 134
Target Start/End: Original strand, 52630570 - 52630637
Alignment:
| Q |
67 |
gtttgaccaccaatcccagcattagagagagtgccaccaacagtcaaatacaagtaatcagtccaaga |
134 |
Q |
| |
|
||||| |||| ||| ||| ||||||| ||||| ||||| |||| |||||||||||||||||||||||| |
|
|
| T |
52630570 |
gtttggccactaataccaccattagatagagtaccacccacagacaaatacaagtaatcagtccaaga |
52630637 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University