View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10822_low_13 (Length: 256)

Name: NF10822_low_13
Description: NF10822
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10822_low_13
NF10822_low_13
[»] chr3 (13 HSPs)
chr3 (46-232)||(35094411-35094594)
chr3 (180-248)||(50934496-50934564)
chr3 (186-247)||(32319473-32319534)
chr3 (180-246)||(44380250-44380316)
chr3 (180-248)||(10179870-10179938)
chr3 (185-246)||(47426351-47426412)
chr3 (180-248)||(10018673-10018741)
chr3 (188-248)||(33509684-33509744)
chr3 (180-248)||(10123213-10123281)
chr3 (185-248)||(31187177-31187240)
chr3 (185-248)||(42664674-42664737)
chr3 (185-248)||(47186176-47186239)
chr3 (184-226)||(21963084-21963126)
[»] scaffold0229 (1 HSPs)
scaffold0229 (180-245)||(13116-13181)
[»] chr6 (4 HSPs)
chr6 (180-245)||(1211954-1212019)
chr6 (185-248)||(11753168-11753231)
chr6 (185-248)||(34245568-34245631)
chr6 (185-239)||(11113557-11113611)
[»] chr7 (3 HSPs)
chr7 (180-248)||(35341532-35341600)
chr7 (185-248)||(48250155-48250218)
chr7 (188-248)||(31306980-31307041)
[»] chr5 (12 HSPs)
chr5 (180-248)||(11607641-11607709)
chr5 (185-248)||(19357368-19357431)
chr5 (183-248)||(33858645-33858710)
chr5 (180-248)||(39570150-39570218)
chr5 (185-248)||(29989963-29990026)
chr5 (185-248)||(1826260-1826323)
chr5 (185-248)||(13015382-13015445)
chr5 (185-248)||(13086754-13086817)
chr5 (184-225)||(13421140-13421181)
chr5 (180-220)||(9827784-9827824)
chr5 (185-248)||(13478152-13478215)
chr5 (185-248)||(38010721-38010784)
[»] chr4 (11 HSPs)
chr4 (185-248)||(35869678-35869741)
chr4 (185-248)||(12473705-12473768)
chr4 (185-248)||(12528114-12528177)
chr4 (185-239)||(22343338-22343392)
chr4 (180-248)||(33249481-33249549)
chr4 (180-248)||(55590478-55590546)
chr4 (185-248)||(52012779-52012842)
chr4 (185-248)||(52910156-52910219)
chr4 (180-248)||(34829190-34829258)
chr4 (180-248)||(21260790-21260858)
chr4 (180-248)||(51811910-51811978)
[»] chr1 (10 HSPs)
chr1 (180-246)||(25161305-25161371)
chr1 (185-246)||(29119433-29119494)
chr1 (185-248)||(2569038-2569101)
chr1 (180-224)||(32676132-32676176)
chr1 (185-248)||(8809747-8809810)
chr1 (185-237)||(46435571-46435623)
chr1 (185-239)||(6223052-6223106)
chr1 (185-243)||(35998253-35998311)
chr1 (180-248)||(8462125-8462192)
chr1 (18-54)||(10227702-10227738)
[»] chr2 (4 HSPs)
chr2 (180-248)||(21603955-21604023)
chr2 (180-248)||(34392188-34392256)
chr2 (180-246)||(37358030-37358096)
chr2 (187-248)||(7381695-7381756)
[»] chr8 (6 HSPs)
chr8 (180-248)||(41179670-41179738)
chr8 (191-248)||(18168392-18168449)
chr8 (191-248)||(18631949-18632006)
chr8 (185-248)||(24337937-24338000)
chr8 (185-225)||(1514804-1514844)
chr8 (184-224)||(32825966-32826006)
[»] scaffold0032 (1 HSPs)
scaffold0032 (180-248)||(34190-34258)


Alignment Details
Target: chr3 (Bit Score: 112; Significance: 1e-56; HSPs: 13)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 112; E-Value: 1e-56
Query Start/End: Original strand, 46 - 232
Target Start/End: Original strand, 35094411 - 35094594
Alignment:
Q  46 tgttcaaaataatttttaataagcatatgnnnnnnnaattaattattaatctgttagtgaagggaactgtgagttttgttaataatggtggttgaaacag 145  Q
    ||||||||||||||||||||||||||| |       |||||||||||||||||||||||||||||||||||||||||||||||||||||   ||||||||    
T  35094411 tgttcaaaataatttttaataagcatacgtttttttaattaattattaatctgttagtgaagggaactgtgagttttgttaataatggt---tgaaacag 35094507  T
Q  146 tcccgatgtgcaaacttgagccgtcagaatttcagatttcacttgtgtaccattaaggtatcaatggtatataccattgactaatta 232  Q
     ||||||||||||||||||||||||| |||||| |||| |||||  |||||||||| ||| || |||||||||||||||||||||||    
T  35094508 ccccgatgtgcaaacttgagccgtcacaatttcggattccacttcagtaccattaaagtaccagtggtatataccattgactaatta 35094594  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 180 - 248
Target Start/End: Original strand, 50934496 - 50934564
Alignment:
Q  180 gatttcacttgtgtaccattaaggtatcaatggtatataccattgactaattaaagtgtgccacctacc 248  Q
    |||||||||||||||||||||||||| |||||||||||||||||| | ||||| |||||||||| ||||    
T  50934496 gatttcacttgtgtaccattaaggtaccaatggtatataccattggccaattagagtgtgccacttacc 50934564  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 186 - 247
Target Start/End: Complemental strand, 32319534 - 32319473
Alignment:
Q  186 acttgtgtaccattaaggtatcaatggtatataccattgactaattaaagtgtgccacctac 247  Q
    |||||||||||||||||||| |||||||||||||||||| | ||||| ||||||||||||||    
T  32319534 acttgtgtaccattaaggtaccaatggtatataccattggccaattagagtgtgccacctac 32319473  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 180 - 246
Target Start/End: Original strand, 44380250 - 44380316
Alignment:
Q  180 gatttcacttgtgtaccattaaggtatcaatggtatataccattgactaattaaagtgtgccaccta 246  Q
    |||| ||||||||||||||||||||| ||||||||||||| |||||| ||||| |||||| ||||||    
T  44380250 gattccacttgtgtaccattaaggtaccaatggtatatactattgaccaattatagtgtgtcaccta 44380316  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 180 - 248
Target Start/End: Complemental strand, 10179938 - 10179870
Alignment:
Q  180 gatttcacttgtgtaccattaaggtatcaatggtatataccattgactaattaaagtgtgccacctacc 248  Q
    |||| ||||||||||||||||| ||| ||||||||||||||||||   ||||| |||||||||||||||    
T  10179938 gattccacttgtgtaccattaaagtaccaatggtatataccattggtcaattagagtgtgccacctacc 10179870  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 185 - 246
Target Start/End: Original strand, 47426351 - 47426412
Alignment:
Q  185 cacttgtgtaccattaaggtatcaatggtatataccattgactaattaaagtgtgccaccta 246  Q
    ||||||||||||||||||||| |||| ||||||||||||| | ||||| |||||| ||||||    
T  47426351 cacttgtgtaccattaaggtaccaatagtatataccattggccaattagagtgtgtcaccta 47426412  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 180 - 248
Target Start/End: Complemental strand, 10018741 - 10018673
Alignment:
Q  180 gatttcacttgtgtaccattaaggtatcaatggtatataccattgactaattaaagtgtgccacctacc 248  Q
    |||| ||||||||||||||||| ||| ||||| ||||||||||||   ||| |||||||||||||||||    
T  10018741 gattccacttgtgtaccattaaagtaccaatgttatataccattggtcaataaaagtgtgccacctacc 10018673  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 188 - 248
Target Start/End: Original strand, 33509684 - 33509744
Alignment:
Q  188 ttgtgtaccattaaggtatcaatggtatataccattgactaattaaagtgtgccacctacc 248  Q
    ||||||||||||||||||  ||| ||||||| ||||||| ||||| |||||||||||||||    
T  33509684 ttgtgtaccattaaggtactaatagtatatatcattgaccaattagagtgtgccacctacc 33509744  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 180 - 248
Target Start/End: Complemental strand, 10123281 - 10123213
Alignment:
Q  180 gatttcacttgtgtaccattaaggtatcaatggtatataccattgactaattaaagtgtgccacctacc 248  Q
    |||| ||||||||||||||||| ||||||||| |||||| || ||   ||| |||||||||||||||||    
T  10123281 gattccacttgtgtaccattaaagtatcaatgttatatatcaatggtcaataaaagtgtgccacctacc 10123213  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 185 - 248
Target Start/End: Complemental strand, 31187240 - 31187177
Alignment:
Q  185 cacttgtgtaccattaaggtatcaatggtatataccattgactaattaaagtgtgccacctacc 248  Q
    ||||| ||||||||||||||| ||||| |||||| ||||||| ||| | |||||||||| ||||    
T  31187240 cacttatgtaccattaaggtaccaatgttatataacattgaccaataagagtgtgccacatacc 31187177  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 185 - 248
Target Start/End: Original strand, 42664674 - 42664737
Alignment:
Q  185 cacttgtgtaccattaaggtatcaatggtatataccattgactaattaaagtgtgccacctacc 248  Q
    ||||||||||||||||||||| ||| | |||||| ||||||| ||| | |||||||||| ||||    
T  42664674 cacttgtgtaccattaaggtaccaaagttatataacattgaccaataagagtgtgccacatacc 42664737  T

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Target: chr3; HSP #12
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 185 - 248
Target Start/End: Original strand, 47186176 - 47186239
Alignment:
Q  185 cacttgtgtaccattaaggtatcaatggtatataccattgactaattaaagtgtgccacctacc 248  Q
    ||||||||||||||||||||| ||||| |||||| ||||| | ||| | |||||||||| ||||    
T  47186176 cacttgtgtaccattaaggtaccaatgttatataacattggccaataagagtgtgccacatacc 47186239  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 184 - 226
Target Start/End: Complemental strand, 21963126 - 21963084
Alignment:
Q  184 tcacttgtgtaccattaaggtatcaatggtatataccattgac 226  Q
    |||||| ||||||||||||||||||||| |||||| |||||||    
T  21963126 tcacttatgtaccattaaggtatcaatgttatataacattgac 21963084  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0229 (Bit Score: 50; Significance: 1e-19; HSPs: 1)
Name: scaffold0229
Description:

Target: scaffold0229; HSP #1
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 180 - 245
Target Start/End: Complemental strand, 13181 - 13116
Alignment:
Q  180 gatttcacttgtgtaccattaaggtatcaatggtatataccattgactaattaaagtgtgccacct 245  Q
    |||||||||||||||||||||||||| |||||||||||||||||| |||||||  |||||||||||    
T  13181 gatttcacttgtgtaccattaaggtaccaatggtatataccattggctaattagtgtgtgccacct 13116  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 50; Significance: 1e-19; HSPs: 4)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 180 - 245
Target Start/End: Complemental strand, 1212019 - 1211954
Alignment:
Q  180 gatttcacttgtgtaccattaaggtatcaatggtatataccattgactaattaaagtgtgccacct 245  Q
    |||||||||||||||||||||||||| |||||||||||||||||| |||||||  |||||||||||    
T  1212019 gatttcacttgtgtaccattaaggtaccaatggtatataccattggctaattagtgtgtgccacct 1211954  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 185 - 248
Target Start/End: Original strand, 11753168 - 11753231
Alignment:
Q  185 cacttgtgtaccattaaggtatcaatggtatataccattgactaattaaagtgtgccacctacc 248  Q
    ||||||||||||||||||||| |||||||||||||||| | | ||||| ||||| |||||||||    
T  11753168 cacttgtgtaccattaaggtaccaatggtatataccatcggccaattagagtgtcccacctacc 11753231  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 185 - 248
Target Start/End: Original strand, 34245568 - 34245631
Alignment:
Q  185 cacttgtgtaccattaaggtatcaatggtatataccattgactaattaaagtgtgccacctacc 248  Q
    |||||||||||||||||||||| |||| |||||| ||||||| ||| |||||||||||| ||||    
T  34245568 cacttgtgtaccattaaggtattaatgttatataacattgaccaataaaagtgtgccacgtacc 34245631  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 185 - 239
Target Start/End: Original strand, 11113557 - 11113611
Alignment:
Q  185 cacttgtgtaccattaaggtatcaatggtatataccattgactaattaaagtgtg 239  Q
    ||||||||||||||||||||| ||||| |||||| ||||||||||| | ||||||    
T  11113557 cacttgtgtaccattaaggtaccaatgctatataacattgactaataagagtgtg 11113611  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 49; Significance: 4e-19; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 180 - 248
Target Start/End: Original strand, 35341532 - 35341600
Alignment:
Q  180 gatttcacttgtgtaccattaaggtatcaatggtatataccattgactaattaaagtgtgccacctacc 248  Q
    |||| ||||||||||||||||||||| ||||| |||||||||||||| ||||| |||||||||||||||    
T  35341532 gattccacttgtgtaccattaaggtaccaatgatatataccattgaccaattatagtgtgccacctacc 35341600  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 185 - 248
Target Start/End: Original strand, 48250155 - 48250218
Alignment:
Q  185 cacttgtgtaccattaaggtatcaatggtatataccattgactaattaaagtgtgccacctacc 248  Q
    ||||||||||||||||||||| ||||| |||||| |||||   ||||| |||||||||||||||    
T  48250155 cacttgtgtaccattaaggtaccaatgatatatatcattggtcaattagagtgtgccacctacc 48250218  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 188 - 248
Target Start/End: Complemental strand, 31307041 - 31306980
Alignment:
Q  188 ttgtgtaccattaaggtatcaatggtatataccattgactaa-ttaaagtgtgccacctacc 248  Q
    |||||||||||||| ||||||||| |||||| ||||| | || ||||||||||| |||||||    
T  31307041 ttgtgtaccattaaagtatcaatgatatatatcattgtccaatttaaagtgtgctacctacc 31306980  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 49; Significance: 4e-19; HSPs: 12)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 180 - 248
Target Start/End: Complemental strand, 11607709 - 11607641
Alignment:
Q  180 gatttcacttgtgtaccattaaggtatcaatggtatataccattgactaattaaagtgtgccacctacc 248  Q
    |||| ||||||| ||||||||||||| |||||||||||||||||||| ||||| |||||||||||||||    
T  11607709 gattccacttgtataccattaaggtaccaatggtatataccattgaccaattatagtgtgccacctacc 11607641  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 185 - 248
Target Start/End: Complemental strand, 19357431 - 19357368
Alignment:
Q  185 cacttgtgtaccattaaggtatcaatggtatataccattgactaattaaagtgtgccacctacc 248  Q
    |||||||||||||||| |||| |||||||||||||||||| | ||||| |||||||||||||||    
T  19357431 cacttgtgtaccattagggtaccaatggtatataccattggccaattagagtgtgccacctacc 19357368  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 183 - 248
Target Start/End: Complemental strand, 33858710 - 33858645
Alignment:
Q  183 ttcacttgtgtaccattaaggtatcaatggtatataccattgactaattaaagtgtgccacctacc 248  Q
    ||||| ||||||||||||||||| |||| ||||||| ||||||| ||||| |||||||||||||||    
T  33858710 ttcacctgtgtaccattaaggtaccaatagtatatatcattgaccaattatagtgtgccacctacc 33858645  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 180 - 248
Target Start/End: Complemental strand, 39570218 - 39570150
Alignment:
Q  180 gatttcacttgtgtaccattaaggtatcaatggtatataccattgactaattaaagtgtgccacctacc 248  Q
    |||| |||||||||| |||||| |||||||||||||||||||||| | ||||| |||||| ||||||||    
T  39570218 gattccacttgtgtatcattaaagtatcaatggtatataccattggccaattagagtgtgtcacctacc 39570150  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 185 - 248
Target Start/End: Original strand, 29989963 - 29990026
Alignment:
Q  185 cacttgtgtaccattaaggtatcaatggtatataccattgactaattaaagtgtgccacctacc 248  Q
    ||||||||||||||||||||||||||| |||||| ||||||| ||| | |||||||||| ||||    
T  29989963 cacttgtgtaccattaaggtatcaatgttatataacattgaccaataagagtgtgccacatacc 29990026  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 185 - 248
Target Start/End: Original strand, 1826260 - 1826323
Alignment:
Q  185 cacttgtgtaccattaaggtatcaatggtatataccattgactaattaaagtgtgccacctacc 248  Q
    ||||||||||||||||| ||| ||||||||||||||||||   ||||| |||||| ||||||||    
T  1826260 cacttgtgtaccattaaagtaccaatggtatataccattggtcaattagagtgtgtcacctacc 1826323  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 185 - 248
Target Start/End: Original strand, 13015382 - 13015445
Alignment:
Q  185 cacttgtgtaccattaaggtatcaatggtatataccattgactaattaaagtgtgccacctacc 248  Q
    ||||||||||||||||||||| ||||| |||||| ||||||| ||| | |||||||||| ||||    
T  13015382 cacttgtgtaccattaaggtaccaatgttatataacattgaccaataagagtgtgccacatacc 13015445  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 185 - 248
Target Start/End: Original strand, 13086754 - 13086817
Alignment:
Q  185 cacttgtgtaccattaaggtatcaatggtatataccattgactaattaaagtgtgccacctacc 248  Q
    ||||||||||||||||||||| ||||| |||||| ||||||| ||| | |||||||||| ||||    
T  13086754 cacttgtgtaccattaaggtaccaatgttatataacattgaccaataagagtgtgccacatacc 13086817  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 184 - 225
Target Start/End: Complemental strand, 13421181 - 13421140
Alignment:
Q  184 tcacttgtgtaccattaaggtatcaatggtatataccattga 225  Q
    |||||||||||||||||||||||||||| |||||| ||||||    
T  13421181 tcacttgtgtaccattaaggtatcaatgttatataacattga 13421140  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 180 - 220
Target Start/End: Original strand, 9827784 - 9827824
Alignment:
Q  180 gatttcacttgtgtaccattaaggtatcaatggtatatacc 220  Q
    |||| ||||||||||||||||||||| ||||||||||||||    
T  9827784 gattccacttgtgtaccattaaggtaccaatggtatatacc 9827824  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 185 - 248
Target Start/End: Complemental strand, 13478215 - 13478152
Alignment:
Q  185 cacttgtgtaccattaaggtatcaatggtatataccattgactaattaaagtgtgccacctacc 248  Q
    ||||||||||||||||||| | ||||| |||||| ||||||| ||| | |||||||||| ||||    
T  13478215 cacttgtgtaccattaaggaaccaatgttatataacattgaccaataagagtgtgccacatacc 13478152  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 185 - 248
Target Start/End: Complemental strand, 38010784 - 38010721
Alignment:
Q  185 cacttgtgtaccattaaggtatcaatggtatataccattgactaattaaagtgtgccacctacc 248  Q
    ||||||||||||||||||||| ||||| |||||| ||||| | ||| | |||||||||| ||||    
T  38010784 cacttgtgtaccattaaggtaccaatgttatataacattggccaataagagtgtgccacatacc 38010721  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 48; Significance: 2e-18; HSPs: 11)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 185 - 248
Target Start/End: Complemental strand, 35869741 - 35869678
Alignment:
Q  185 cacttgtgtaccattaaggtatcaatggtatataccattgactaattaaagtgtgccacctacc 248  Q
    ||||||||||||||||||||| |||||||||||||||||||| ||||| | |||||||||||||    
T  35869741 cacttgtgtaccattaaggtaccaatggtatataccattgaccaattataatgtgccacctacc 35869678  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 185 - 248
Target Start/End: Original strand, 12473705 - 12473768
Alignment:
Q  185 cacttgtgtaccattaaggtatcaatggtatataccattgactaattaaagtgtgccacctacc 248  Q
    ||||||| ||||||||||||| |||||||||||||||||| | ||||| |||||||||||||||    
T  12473705 cacttgtataccattaaggtaccaatggtatataccattggccaattagagtgtgccacctacc 12473768  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 185 - 248
Target Start/End: Original strand, 12528114 - 12528177
Alignment:
Q  185 cacttgtgtaccattaaggtatcaatggtatataccattgactaattaaagtgtgccacctacc 248  Q
    ||||||| ||||||||||||| |||||||||||||||||| | ||||| |||||||||||||||    
T  12528114 cacttgtataccattaaggtaccaatggtatataccattggccaattagagtgtgccacctacc 12528177  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 185 - 239
Target Start/End: Original strand, 22343338 - 22343392
Alignment:
Q  185 cacttgtgtaccattaaggtatcaatggtatataccattgactaattaaagtgtg 239  Q
    |||||||||||||||||||||||||||||||||| ||||||| ||||| ||||||    
T  22343338 cacttgtgtaccattaaggtatcaatggtatatatcattgaccaattagagtgtg 22343392  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 180 - 248
Target Start/End: Complemental strand, 33249549 - 33249481
Alignment:
Q  180 gatttcacttgtgtaccattaaggtatcaatggtatataccattgactaattaaagtgtgccacctacc 248  Q
    ||||||||||||||||||||||||||  |||||||||||| |||| | ||||| |||||| ||||||||    
T  33249549 gatttcacttgtgtaccattaaggtacaaatggtatatacaattggccaattagagtgtgtcacctacc 33249481  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 180 - 248
Target Start/End: Original strand, 55590478 - 55590546
Alignment:
Q  180 gatttcacttgtgtaccattaaggtatcaatggtatataccattgactaattaaagtgtgccacctacc 248  Q
    |||| ||||||||||||||||||||| |||||||||||| ||||||  ||||| |||||| ||||||||    
T  55590478 gattccacttgtgtaccattaaggtaccaatggtatatatcattgatcaattatagtgtgtcacctacc 55590546  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 185 - 248
Target Start/End: Original strand, 52012779 - 52012842
Alignment:
Q  185 cacttgtgtaccattaaggtatcaatggtatataccattgactaattaaagtgtgccacctacc 248  Q
    ||||||||||||||||||||| ||||| |||||| ||||||| ||| |||||||||||| ||||    
T  52012779 cacttgtgtaccattaaggtaccaatgttatataacattgaccaataaaagtgtgccacatacc 52012842  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 185 - 248
Target Start/End: Complemental strand, 52910219 - 52910156
Alignment:
Q  185 cacttgtgtaccattaaggtatcaatggtatataccattgactaattaaagtgtgccacctacc 248  Q
    |||||||||||||| | |||| ||||| |||||||||||| | |||||||||||||||||||||    
T  52910219 cacttgtgtaccataatggtaccaatgttatataccattggccaattaaagtgtgccacctacc 52910156  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 180 - 248
Target Start/End: Complemental strand, 34829258 - 34829190
Alignment:
Q  180 gatttcacttgtgtaccattaaggtatcaatggtatataccattgactaattaaagtgtgccacctacc 248  Q
    |||||||||| ||||| ||||||||| ||||| |||||| || || | |||||||||||| ||||||||    
T  34829258 gatttcacttatgtactattaaggtaccaatgatatatatcaatggccaattaaagtgtgtcacctacc 34829190  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 180 - 248
Target Start/End: Original strand, 21260790 - 21260858
Alignment:
Q  180 gatttcacttgtgtaccattaaggtatcaatggtatataccattgactaattaaagtgtgccacctacc 248  Q
    |||| ||||| | ||||||||||||| ||||| |||||| ||||| | ||||| |||||| ||||||||    
T  21260790 gattccacttatataccattaaggtaccaatgatatatatcattggccaattagagtgtgtcacctacc 21260858  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 180 - 248
Target Start/End: Original strand, 51811910 - 51811978
Alignment:
Q  180 gatttcacttgtgtaccattaaggtatcaatggtatataccattgactaattaaagtgtgccacctacc 248  Q
    |||| |||| |||||||||||||||||||| | ||||||  |||| | ||||| ||| |||||||||||    
T  51811910 gattccactcgtgtaccattaaggtatcaaagatatatattattggccaattagagtatgccacctacc 51811978  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 47; Significance: 6e-18; HSPs: 10)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 180 - 246
Target Start/End: Original strand, 25161305 - 25161371
Alignment:
Q  180 gatttcacttgtgtaccattaaggtatcaatggtatataccattgactaattaaagtgtgccaccta 246  Q
    |||| ||||||||||||||||| || ||||||||||||||||||||| ||||| |||||||||||||    
T  25161305 gattccacttgtgtaccattaaagtctcaatggtatataccattgaccaattacagtgtgccaccta 25161371  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 185 - 246
Target Start/End: Complemental strand, 29119494 - 29119433
Alignment:
Q  185 cacttgtgtaccattaaggtatcaatggtatataccattgactaattaaagtgtgccaccta 246  Q
    ||||||||||||||||||||| |||||||||||||||||| | ||||| |||||||||||||    
T  29119494 cacttgtgtaccattaaggtaccaatggtatataccattggccaattagagtgtgccaccta 29119433  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 185 - 248
Target Start/End: Original strand, 2569038 - 2569101
Alignment:
Q  185 cacttgtgtaccattaaggtatcaatggtatataccattgactaattaaagtgtgccacctacc 248  Q
    ||||||||||||||||||||| |||||||||||| ||||  | ||||| |||||||||||||||    
T  2569038 cacttgtgtaccattaaggtaccaatggtatatatcatttgccaattagagtgtgccacctacc 2569101  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 180 - 224
Target Start/End: Original strand, 32676132 - 32676176
Alignment:
Q  180 gatttcacttgtgtaccattaaggtatcaatggtatataccattg 224  Q
    |||| ||||||||||||||||||||| ||||||||||||||||||    
T  32676132 gattccacttgtgtaccattaaggtaccaatggtatataccattg 32676176  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 185 - 248
Target Start/End: Complemental strand, 8809810 - 8809747
Alignment:
Q  185 cacttgtgtaccattaaggtatcaatggtatataccattgactaattaaagtgtgccacctacc 248  Q
    ||||||||||||||||||||| ||||| |||||| ||||||| ||| | |||||||||| ||||    
T  8809810 cacttgtgtaccattaaggtaccaatgttatataacattgaccaataagagtgtgccacgtacc 8809747  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 185 - 237
Target Start/End: Complemental strand, 46435623 - 46435571
Alignment:
Q  185 cacttgtgtaccattaaggtatcaatggtatataccattgactaattaaagtg 237  Q
    ||||||||||||||||||||| ||||||||||||| |||| | ||||| ||||    
T  46435623 cacttgtgtaccattaaggtaccaatggtatatacaattggccaattagagtg 46435571  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 185 - 239
Target Start/End: Original strand, 6223052 - 6223106
Alignment:
Q  185 cacttgtgtaccattaaggtatcaatggtatataccattgactaattaaagtgtg 239  Q
    ||||||||||||||||| ||||||||| |||||| ||||||  |||||| |||||    
T  6223052 cacttgtgtaccattaaagtatcaatgttatatatcattgatcaattaaggtgtg 6223106  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 185 - 243
Target Start/End: Original strand, 35998253 - 35998311
Alignment:
Q  185 cacttgtgtaccattaaggtatcaatggtatataccattgactaattaaagtgtgccac 243  Q
    ||||||| ||||||||||||| ||||| |||||| |||||| |||| | ||||||||||    
T  35998253 cacttgtataccattaaggtaccaatgttatataacattgattaataagagtgtgccac 35998311  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 180 - 248
Target Start/End: Original strand, 8462125 - 8462192
Alignment:
Q  180 gatttcacttgtgtaccattaaggtatcaatggtatataccattgactaattaaagtgtgccacctacc 248  Q
    |||| ||||||||||  ||||| ||| |||||||||||| ||||||  ||||| |||||||||||||||    
T  8462125 gattccacttgtgtat-attaaagtaccaatggtatatatcattgatcaattatagtgtgccacctacc 8462192  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 18 - 54
Target Start/End: Complemental strand, 10227738 - 10227702
Alignment:
Q  18 aggttcgttcctatacaagaatttctcatgttcaaaa 54  Q
    ||||||||||||| ||||||||||||||| |||||||    
T  10227738 aggttcgttcctacacaagaatttctcattttcaaaa 10227702  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 45; Significance: 1e-16; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 180 - 248
Target Start/End: Original strand, 21603955 - 21604023
Alignment:
Q  180 gatttcacttgtgtaccattaaggtatcaatggtatataccattgactaattaaagtgtgccacctacc 248  Q
    |||| ||||||||||||||||||||| |||||||||||||||||||| ||||| |||||  ||||||||    
T  21603955 gattccacttgtgtaccattaaggtaccaatggtatataccattgaccaattatagtgtatcacctacc 21604023  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 180 - 248
Target Start/End: Complemental strand, 34392256 - 34392188
Alignment:
Q  180 gatttcacttgtgtaccattaaggtatcaatggtatataccattgactaattaaagtgtgccacctacc 248  Q
    |||| ||||||||||||||| ||||| |||||||||||||||||| | ||||| |||||||||||||||    
T  34392256 gattccacttgtgtaccattgaggtaccaatggtatataccattggccaattagagtgtgccacctacc 34392188  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 180 - 246
Target Start/End: Complemental strand, 37358096 - 37358030
Alignment:
Q  180 gatttcacttgtgtaccattaaggtatcaatggtatataccattgactaattaaagtgtgccaccta 246  Q
    |||| |||||||||| |||||||||| ||||| |||||||||||||||||||| |||||| ||||||    
T  37358096 gattccacttgtgtatcattaaggtaccaatgatatataccattgactaattagagtgtgtcaccta 37358030  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 187 - 248
Target Start/End: Original strand, 7381695 - 7381756
Alignment:
Q  187 cttgtgtaccattaaggtatcaatggtatataccattgactaattaaagtgtgccacctacc 248  Q
    ||||||||||||||||||| ||||||||||||| |||| | ||||| ||||||||| |||||    
T  7381695 cttgtgtaccattaaggtaccaatggtatatactattggccaattagagtgtgccatctacc 7381756  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 6)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 180 - 248
Target Start/End: Complemental strand, 41179738 - 41179670
Alignment:
Q  180 gatttcacttgtgtaccattaaggtatcaatggtatataccattgactaattaaagtgtgccacctacc 248  Q
    |||| ||||||||||||||||||||| ||||| |||||| ||||| | |||||||||||| ||||||||    
T  41179738 gattccacttgtgtaccattaaggtaccaatgatatatatcattggccaattaaagtgtgtcacctacc 41179670  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 191 - 248
Target Start/End: Original strand, 18168392 - 18168449
Alignment:
Q  191 tgtaccattaaggtatcaatggtatataccattgactaattaaagtgtgccacctacc 248  Q
    ||||||||||||||| |||||||||||| ||||||  ||||| ||||| |||||||||    
T  18168392 tgtaccattaaggtaccaatggtatatatcattgatcaattagagtgtcccacctacc 18168449  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 191 - 248
Target Start/End: Original strand, 18631949 - 18632006
Alignment:
Q  191 tgtaccattaaggtatcaatggtatataccattgactaattaaagtgtgccacctacc 248  Q
    ||||||||||||||| |||||||||||| ||||||  ||||| ||||| |||||||||    
T  18631949 tgtaccattaaggtaccaatggtatatatcattgatcaattagagtgtcccacctacc 18632006  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 185 - 248
Target Start/End: Complemental strand, 24338000 - 24337937
Alignment:
Q  185 cacttgtgtaccattaaggtatcaatggtatataccattgactaattaaagtgtgccacctacc 248  Q
    ||||||||||| ||||||||| |||||||||||||||| |   ||||| ||||||||| |||||    
T  24338000 cacttgtgtactattaaggtagcaatggtatataccatcggtcaattagagtgtgccatctacc 24337937  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 185 - 225
Target Start/End: Original strand, 1514804 - 1514844
Alignment:
Q  185 cacttgtgtaccattaaggtatcaatggtatataccattga 225  Q
    ||||||||||||||||||||| ||||| |||||| ||||||    
T  1514804 cacttgtgtaccattaaggtaccaatgttatataacattga 1514844  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 184 - 224
Target Start/End: Complemental strand, 32826006 - 32825966
Alignment:
Q  184 tcacttgtgtaccattaaggtatcaatggtatataccattg 224  Q
    |||||||||||||||||| ||||||||| | ||||||||||    
T  32826006 tcacttgtgtaccattaaagtatcaatgttgtataccattg 32825966  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0032 (Bit Score: 37; Significance: 0.000000000006; HSPs: 1)
Name: scaffold0032
Description:

Target: scaffold0032; HSP #1
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 180 - 248
Target Start/End: Original strand, 34190 - 34258
Alignment:
Q  180 gatttcacttgtgtaccattaaggtatcaatggtatataccattgactaattaaagtgtgccacctacc 248  Q
    |||| ||||||||||||||||||||| ||||||||||||  |||| | ||||| |||||||||| ||||    
T  34190 gattccacttgtgtaccattaaggtaccaatggtatatattattggccaattagagtgtgccacttacc 34258  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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