View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10822_low_15 (Length: 248)
Name: NF10822_low_15
Description: NF10822
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10822_low_15 |
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| [»] scaffold0016 (1 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 124; Significance: 7e-64; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 124; E-Value: 7e-64
Query Start/End: Original strand, 49 - 237
Target Start/End: Original strand, 38979104 - 38979288
Alignment:
| Q |
49 |
ggtctttgatttgtctcactttgtttgatgtctcgtcctattttttatcaattttctttcattcggtgtggatgtcacccaattctatgatcaccactag |
148 |
Q |
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| T |
38979104 |
ggtctttgaattgtctcactttgtt----gtctcgttctatttttggtcaattttctttcattcggtgagtatgtcacccaattcaattatcaccactag |
38979199 |
T |
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| Q |
149 |
aagtgaagataattccttatgggtttactgcccaaccttaagaccctagtcaaagaggtcgtggtttggtctgtacttatggcgttcat |
237 |
Q |
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| T |
38979200 |
aagggaagataattcctaatgggtttactgcccaaccttaagaccctagtcaaagaggtcgtggtttggtctgcacttatgtcgttcat |
38979288 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 67; E-Value: 7e-30
Query Start/End: Original strand, 20 - 211
Target Start/End: Complemental strand, 5518843 - 5518656
Alignment:
| Q |
20 |
atttgttgtccgatcttattatatttgttggtctttgatttgtctcactttgtttgatgtctcgtcctattttttatcaattttctttcattcggtgtgg |
119 |
Q |
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| T |
5518843 |
atttgttgtccaatcttattatttcttttggtctttgaattgtctcactttgtttgtcgtctcgtcttatatttggtcagttttctttcattcagtaatg |
5518744 |
T |
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| Q |
120 |
atgtcacccaattctatgatcaccactagaagtgaagataattccttatgggtttactgcccaaccttaagaccctagtcaaagaggtcgtg |
211 |
Q |
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| T |
5518743 |
atgttctccaattctatgatcaccactagaagggaaattaattccttatgggt----cgcccaaccgtaaaaccttagttaaagaggtcgtg |
5518656 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 124; Significance: 7e-64; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 124; E-Value: 7e-64
Query Start/End: Original strand, 19 - 237
Target Start/End: Original strand, 16101575 - 16101793
Alignment:
| Q |
19 |
catttgttgtccgatcttattatatttgttggtctttgatttgtctcactttgtttgatgtctcgtcctattttttatcaattttctttcattcggtgtg |
118 |
Q |
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| T |
16101575 |
catttgttgtccaatcttgttatttcttttggtctttgattggtcttactttgtttgttgtcttgtcctaattttggtcaattttctttcattcggtgag |
16101674 |
T |
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| Q |
119 |
gatgtcacccaattctatgatcaccactagaagtgaagataattccttatgggtttactg-cccaaccttaagaccctagtcaaagaggtcgtggtttgg |
217 |
Q |
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| T |
16101675 |
gatgtcacccaattttatgatcaccactag-ggggaagataattccttatgggtttactgtccaaaccttaaggccctagtcaaagaggttgtggtttgg |
16101773 |
T |
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| Q |
218 |
tctgtacttatggcgttcat |
237 |
Q |
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| T |
16101774 |
tccgtacttatggcgttcat |
16101793 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 107; E-Value: 9e-54
Query Start/End: Original strand, 19 - 225
Target Start/End: Original strand, 14655100 - 14655306
Alignment:
| Q |
19 |
catttgttgtccgatcttattatatttgttggtctttgatttgtctcactttgtttgatgtctcgtcctattttttatcaattttctttcattcggtgtg |
118 |
Q |
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| T |
14655100 |
catttgttgtccaatcttattatctcttttggtctttgaattgttttattttgtttgttgtctcgtcctatttttggtcaattttctttcattcgatgag |
14655199 |
T |
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| Q |
119 |
gatgtcacccaattctatgatcaccactagaagtgaagataattccttatgggtttactgcccaaccttaagaccctagtcaaagaggtcgtggtttggt |
218 |
Q |
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| T |
14655200 |
ggtgtcacccaattctattatcaccactagaagggaaattagtttcttatgggtttactgcccaaccttaagaccttagtcaaagagttcgtgtttcggt |
14655299 |
T |
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| Q |
219 |
ctgtact |
225 |
Q |
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| T |
14655300 |
ccgtact |
14655306 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 189 - 237
Target Start/End: Original strand, 7685246 - 7685294
Alignment:
| Q |
189 |
agaccctagtcaaagaggtcgtggtttggtctgtacttatggcgttcat |
237 |
Q |
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| T |
7685246 |
agaccctagtcaaagaggtcgtggtttggtcggtacttatggtgttcat |
7685294 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0016 (Bit Score: 38; Significance: 0.000000000001; HSPs: 1)
Name: scaffold0016
Description:
Target: scaffold0016; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 47 - 204
Target Start/End: Original strand, 76836 - 76992
Alignment:
| Q |
47 |
ttggtctttgatttgtctcactttgtttgatgtctcgtcctattttttatcaattttctttcattcggtgtggatgtcacccaattctatgatcaccact |
146 |
Q |
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|||||||||||||||||||||| | |||| |||| ||||| | || ||||||||| |||||| ||| || ||||||||| | | | |||| ||||| |
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| T |
76836 |
ttggtctttgatttgtctcactat-tttgtcgtcttgtcctttattcagtcaattttccttcatttagtgagggtgtcacccattaccaagatctccact |
76934 |
T |
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| Q |
147 |
agaagtgaagataattccttatgggtttactgcccaaccttaagaccctagtcaaaga |
204 |
Q |
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||||| ||| ||||| ||||||| |||| ||||||||||||| ||| |||| ||||| |
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| T |
76935 |
agaagggaaattaatttcttatggatttattgcccaaccttaaaaccttagttaaaga |
76992 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 137 - 210
Target Start/End: Complemental strand, 9305951 - 9305879
Alignment:
| Q |
137 |
gatcaccactagaagtgaagataattccttatgggtttactgcccaaccttaagaccctagtcaaagaggtcgt |
210 |
Q |
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| T |
9305951 |
gatctccactagaagggaaattaattccttatgagtttattggccaaccttaa-accttagttaaagaggtcgt |
9305879 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 173 - 205
Target Start/End: Original strand, 31394015 - 31394047
Alignment:
| Q |
173 |
ttactgcccaaccttaagaccctagtcaaagag |
205 |
Q |
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| T |
31394015 |
ttacttcccaaccttaagaccctagtcaaagag |
31394047 |
T |
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