View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10822_low_17 (Length: 228)
Name: NF10822_low_17
Description: NF10822
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10822_low_17 |
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Alignment Details
Target: chr2 (Bit Score: 155; Significance: 2e-82; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 155; E-Value: 2e-82
Query Start/End: Original strand, 12 - 214
Target Start/End: Original strand, 6337163 - 6337360
Alignment:
| Q |
12 |
gaacctgtgagaaggggtttgggaaatatgaaacagataaaagtagttagttatacatgattgttaatcttgtgtatacagtagaaccaactagcaaact |
111 |
Q |
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| T |
6337163 |
gaacctgtaagaaggggtttgggaaatatgaaacagataaaagtagttagttatacatgattgttaatcttgtgtatacagtagaactaact-------- |
6337254 |
T |
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| Q |
112 |
agcatcaaactaaacgtgtaaaagcagccaaatatgcagcataccaggttgtacaattgtttgag---attgctggaaattatgaccactcttccaatcc |
208 |
Q |
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| T |
6337255 |
agcatcaaactaaacgtgtaaaagcagccaaatatgcagcataccaggttgtacaattgtttgagaatattgctggaaattatgaccactcttccaatcc |
6337354 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 108 - 214
Target Start/End: Original strand, 14191068 - 14191171
Alignment:
| Q |
108 |
aactagcatcaaactaaacgtgtaaaagcagccaaatatgcagcataccaggttgtacaattgtttgagattgctggaaattatgaccactcttccaatc |
207 |
Q |
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| T |
14191068 |
aactagcatcaaactgagcatgtaaaagcagtcaaatatgca---taccaggttgtacaattgtttgagattgctggaaattgtgaccactcttccaatc |
14191164 |
T |
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| Q |
208 |
ccagaac |
214 |
Q |
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| T |
14191165 |
ccagaac |
14191171 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 163 - 214
Target Start/End: Complemental strand, 14187996 - 14187945
Alignment:
| Q |
163 |
tacaattgtttgagattgctggaaattatgaccactcttccaatcccagaac |
214 |
Q |
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| T |
14187996 |
tacaattgtttgagattgcaggaaattgtgaccactcttccaatcccagaac |
14187945 |
T |
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