View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10822_low_4 (Length: 359)
Name: NF10822_low_4
Description: NF10822
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10822_low_4 |
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Alignment Details
Target: chr7 (Bit Score: 298; Significance: 1e-167; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 298; E-Value: 1e-167
Query Start/End: Original strand, 25 - 354
Target Start/End: Complemental strand, 699592 - 699263
Alignment:
| Q |
25 |
cccatggcattgtcttcttgtacccccgggaacacgggtaggtttccgaattgttgaatttctctagggagtttatcagcagaagctttcatcggcatgc |
124 |
Q |
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| T |
699592 |
cccatggcattgtcttcttgtacccccgggaacacgggtgggtttccgaattgttgaatttctctagcgagtttatcagcagaagttttcatcggcatgc |
699493 |
T |
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| Q |
125 |
cggtacaatgaaaggcaaatggcagaagcacattggtgcctctcaatcggtaaaaagccgctgcgaattccaacttggaaagagaaaatgcatggcctaa |
224 |
Q |
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| T |
699492 |
cggtacaatgaaaggcaaatggcagaagcacattggcgcctctcaatcggtaaaaagctgctgcgaattccaacttggaaagagaaaatgcatggcctaa |
699393 |
T |
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| Q |
225 |
atgaaggcaaccattcgtgtaaggaaaagggaaattgccgaagaatttttcacccggttttggagggttttcaccaggttctgatttgaaaacatctttc |
324 |
Q |
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| T |
699392 |
atgaaggtaaccattcgtgtaaggaaaagggaaattgccgaagaatttttcacccggttttggagggttttcaccaggttctgatttgaaaacatcttcc |
699293 |
T |
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| Q |
325 |
tcttcccaccattttttaacctttgcttct |
354 |
Q |
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| T |
699292 |
tcttcccaccattttttaacctttgattct |
699263 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 149 - 340
Target Start/End: Complemental strand, 697377 - 697186
Alignment:
| Q |
149 |
gaagcacattggtgcctctcaatcggtaaaaagccgctgcgaattccaacttggaaagagaaaatgcatggcctaaatgaaggcaa-ccattcgtgtaag |
247 |
Q |
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| T |
697377 |
gaagcacattggcgcctctaaatcggtgata-gccgcaatgaattccaacttggacagagaagatacatggcctaaatgaaggtaaaccattcgtgtaag |
697279 |
T |
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| Q |
248 |
gaaaagggaaattgccgaagaatttttcacccggttttggagggttttcaccaggttctgatttgaaaacatctttctcttcccaccattttt |
340 |
Q |
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| T |
697278 |
gaaaaggaaagttgccaaaaaacaattcacctagttttggagggttttaaccgcgttatgatatgaaatcatcttcctcttcccaccaatttt |
697186 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 66; Significance: 4e-29; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 66; E-Value: 4e-29
Query Start/End: Original strand, 76 - 349
Target Start/End: Original strand, 23262594 - 23262867
Alignment:
| Q |
76 |
tgttgaatttctctagggagtttatcagcagaagctttcatcggcatgccggtacaatgaaaggcaaatggcagaagcacattggtgcctctcaatcggt |
175 |
Q |
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| T |
23262594 |
tgttgaatctctctagcaagcttatcagcagaagccttaataggcataccagtacaatgaaaagcaaatggcaaaagaacattcgcgccgcgaagacgat |
23262693 |
T |
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| Q |
176 |
aaaaagccgctgcgaattccaacttggaaagagaaaatgcatggcctaaatgaaggcaaccattcgtgtaaggaaaagggaaattgccgaagaatttttc |
275 |
Q |
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| T |
23262694 |
gaaacgccgcagcaaattcaagtttggaaagcgaaaaagcatgacctaaatgtaagtaaccgttcatataaggaaaagggaaattcccgaagaatttttc |
23262793 |
T |
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| Q |
276 |
acccggttttggagggttttcaccaggttctgatttgaaaacatctttctcttcccaccattttttaacctttg |
349 |
Q |
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| T |
23262794 |
accttcttgaggtggtttgttaccgggttcagatttgaaaacttgtttctcttcccaccatttttgaacttttg |
23262867 |
T |
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