View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10822_low_6 (Length: 348)
Name: NF10822_low_6
Description: NF10822
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10822_low_6 |
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Alignment Details
Target: chr7 (Bit Score: 154; Significance: 1e-81; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 154; E-Value: 1e-81
Query Start/End: Original strand, 146 - 338
Target Start/End: Original strand, 11895444 - 11895634
Alignment:
| Q |
146 |
tcacttgcaggtacacaaaaagcacatttcaatggatttatttttaatctatacttttcctcattctctcaaaggattgtcgaaggttgtctaaatgact |
245 |
Q |
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| T |
11895444 |
tcacttgcaggtacacaaaaagcacatttgaatggattcatttttaatctata--tttcctcattcccttaaaggattgtcgaaggttgtttaaatgact |
11895541 |
T |
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| Q |
246 |
atttttcaacgaggattttacgactatgtcgtcaatgtatactagcataaaggtataaataaaatcatgaaacatagaattcattgccctttg |
338 |
Q |
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| T |
11895542 |
atttttcaacgaggattttacgactatgtcgtcaatgtttactagcataaaggtataaataaaatcatgaaacataaaattcattgccctttg |
11895634 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 19 - 145
Target Start/End: Original strand, 11895214 - 11895348
Alignment:
| Q |
19 |
ttttgatgctcttgctcccacttgaaactatcttcatcttgcagtcgaactaatgacgaaaatgcttgnnnnnnnccactt-------agataaacctcc |
111 |
Q |
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| T |
11895214 |
ttttgatgctcttgctcccacttgaaactatcttcatttttcagtcgaactaatgacgaaaatgcttgtttttttccacttaaatttgagataaacctcc |
11895313 |
T |
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| Q |
112 |
ttaggaagttt-atttttctagcaatgactgaaat |
145 |
Q |
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| T |
11895314 |
ttaggaagtttaatttttccagcaatgactgaaat |
11895348 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 304 - 338
Target Start/End: Original strand, 17806954 - 17806988
Alignment:
| Q |
304 |
ataaaatcatgaaacatagaattcattgccctttg |
338 |
Q |
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| T |
17806954 |
ataaaatcatgaaacatagaattcattgctctttg |
17806988 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 304 - 338
Target Start/End: Original strand, 25114401 - 25114435
Alignment:
| Q |
304 |
ataaaatcatgaaacatagaattcattgccctttg |
338 |
Q |
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||||||||||||||||||||||||||||| ||||| |
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| T |
25114401 |
ataaaatcatgaaacatagaattcattgctctttg |
25114435 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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