View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10823_high_3 (Length: 239)

Name: NF10823_high_3
Description: NF10823
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10823_high_3
NF10823_high_3
[»] chr1 (1 HSPs)
chr1 (1-113)||(19218168-19218280)
[»] chr6 (2 HSPs)
chr6 (1-84)||(24997606-24997688)
chr6 (5-64)||(24999835-24999894)
[»] chr7 (3 HSPs)
chr7 (179-225)||(1723739-1723785)
chr7 (179-223)||(12315273-12315317)
chr7 (179-223)||(18536119-18536163)
[»] scaffold0054 (1 HSPs)
scaffold0054 (179-223)||(28477-28521)
[»] chr3 (1 HSPs)
chr3 (181-225)||(54077107-54077151)
[»] chr4 (1 HSPs)
chr4 (183-225)||(13757445-13757487)
[»] chr2 (1 HSPs)
chr2 (179-223)||(24079252-24079296)


Alignment Details
Target: chr1 (Bit Score: 93; Significance: 2e-45; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 93; E-Value: 2e-45
Query Start/End: Original strand, 1 - 113
Target Start/End: Complemental strand, 19218280 - 19218168
Alignment:
Q  1 tcatgtttttaactaattgatgttctttgtttgggtctattcattgatgttaatttatagcttattatagcttagtaaaatgttcaagtatgaagtgtag 100  Q
    |||||||||||| ||||||||||||||||||||| |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||  |||    
T  19218280 tcatgtttttaattaattgatgttctttgtttggttctattcattgatgttaatttatagcttattaaagcttagtaaaatgttcaagtatgaagcatag 19218181  T
Q  101 tataaacgaagaa 113  Q
    |||||||||||||    
T  19218180 tataaacgaagaa 19218168  T

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Target: chr6 (Bit Score: 60; Significance: 1e-25; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 1 - 84
Target Start/End: Complemental strand, 24997688 - 24997606
Alignment:
Q  1 tcatgtttttaactaattgatgttctttgtttgggtctattcattgatgttaatttatagcttattatagcttagtaaaatgtt 84  Q
    |||||||||||| |||||||||||||| |||||| |||  ||||||||||||||||||||||||||||||||||||||||||||    
T  24997688 tcatgtttttaattaattgatgttctt-gtttggttctggtcattgatgttaatttatagcttattatagcttagtaaaatgtt 24997606  T

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Target: chr6; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 5 - 64
Target Start/End: Original strand, 24999835 - 24999894
Alignment:
Q  5 gtttttaactaattgatgttctttgtttgggtctattcattgatgttaatttatagctta 64  Q
    |||||||| ||||||||||||||||||||| |||  |||||||||||| |||| ||||||    
T  24999835 gtttttaaataattgatgttctttgtttggttctgatcattgatgttagtttagagctta 24999894  T

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Target: chr7 (Bit Score: 39; Significance: 0.0000000000003; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 179 - 225
Target Start/End: Complemental strand, 1723785 - 1723739
Alignment:
Q  179 gattagacaaatgcaataagagaaagggaaattggataaagagggtg 225  Q
    ||||||||||||||||||||||| ||||||||||| |||||||||||    
T  1723785 gattagacaaatgcaataagagatagggaaattgggtaaagagggtg 1723739  T

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Target: chr7; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 179 - 223
Target Start/End: Complemental strand, 12315317 - 12315273
Alignment:
Q  179 gattagacaaatgcaataagagaaagggaaattggataaagaggg 223  Q
    ||||||||||||||||||||||| |||   |||||||||||||||    
T  12315317 gattagacaaatgcaataagagagaggtgcattggataaagaggg 12315273  T

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Target: chr7; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 179 - 223
Target Start/End: Complemental strand, 18536163 - 18536119
Alignment:
Q  179 gattagacaaatgcaataagagaaagggaaattggataaagaggg 223  Q
    ||||||||||||||||||||||| ||| | ||||| |||||||||    
T  18536163 gattagacaaatgcaataagagagaggtagattgggtaaagaggg 18536119  T

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Target: scaffold0054 (Bit Score: 37; Significance: 0.000000000005; HSPs: 1)
Name: scaffold0054
Description:

Target: scaffold0054; HSP #1
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 179 - 223
Target Start/End: Original strand, 28477 - 28521
Alignment:
Q  179 gattagacaaatgcaataagagaaagggaaattggataaagaggg 223  Q
    ||||||||||||||||||||||| ||||||||||| |||||||||    
T  28477 gattagacaaatgcaataagagagagggaaattgggtaaagaggg 28521  T

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Target: chr3 (Bit Score: 37; Significance: 0.000000000005; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 181 - 225
Target Start/End: Complemental strand, 54077151 - 54077107
Alignment:
Q  181 ttagacaaatgcaataagagaaagggaaattggataaagagggtg 225  Q
    ||||||||||||||||||||| ||||||||||| |||||||||||    
T  54077151 ttagacaaatgcaataagagagagggaaattgggtaaagagggtg 54077107  T

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Target: chr4 (Bit Score: 35; Significance: 0.00000000008; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 183 - 225
Target Start/End: Complemental strand, 13757487 - 13757445
Alignment:
Q  183 agacaaatgcaataagagaaagggaaattggataaagagggtg 225  Q
    ||||||||||||||||||| ||||||||||| |||||||||||    
T  13757487 agacaaatgcaataagagatagggaaattgggtaaagagggtg 13757445  T

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Target: chr2 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 179 - 223
Target Start/End: Original strand, 24079252 - 24079296
Alignment:
Q  179 gattagacaaatgcaataagagaaagggaaattggataaagaggg 223  Q
    ||||||||||||||||||||||| ||| | ||||| |||||||||    
T  24079252 gattagacaaatgcaataagagagaggtagattgggtaaagaggg 24079296  T

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