View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10823_high_4 (Length: 232)
Name: NF10823_high_4
Description: NF10823
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10823_high_4 |
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| [»] chr6 (2 HSPs) |
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Alignment Details
Target: chr6 (Bit Score: 212; Significance: 1e-116; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 212; E-Value: 1e-116
Query Start/End: Original strand, 1 - 232
Target Start/End: Original strand, 33189671 - 33189902
Alignment:
| Q |
1 |
gtgggggagtgattcattgcggtggtacacactgttgttgtcgtgctcacgcaggacatcgcctcttggtctgaaggattttgtgtactcgtcgttaatt |
100 |
Q |
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| T |
33189671 |
gtgggggagtgattcattgcggtggtacacactgttgttgtcgtgctcacgcaggacatcgccttttggtctgaaggattttgtctactcgttgttaatt |
33189770 |
T |
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| Q |
101 |
acaagattagccttctggccgatccagaacacaaatattgttaattgtacctaatttgtaattagatctaatataaaaacttaacaatactaatattgag |
200 |
Q |
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| T |
33189771 |
acaggattagccttctggccgatccagaacacaaatattgttaattgtacctaatttgtaattagacctaatataaaaacttaacaatactaatattgag |
33189870 |
T |
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| Q |
201 |
ttggagtatatttttcgttgtatctaattaat |
232 |
Q |
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| T |
33189871 |
ttggagtatatttttcgttgtatctaattaat |
33189902 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 135 - 202
Target Start/End: Original strand, 33189907 - 33189974
Alignment:
| Q |
135 |
atattgttaattgtacctaatttgtaattagatctaatataaaaacttaacaatactaatattgagtt |
202 |
Q |
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| T |
33189907 |
atattgttaattgtatcttattcttaattagacctaatataaaaacttaacaatactaatattaagtt |
33189974 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 9 - 84
Target Start/End: Original strand, 42205115 - 42205190
Alignment:
| Q |
9 |
gtgattcattgcggtggtacacactgttgttgtcgtgctcacgcaggacatcgcctcttggtctgaaggattttgt |
84 |
Q |
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| T |
42205115 |
gtgattcagtgcggtggtacacactgttgctggcatgctcacgcatgacaccacccgttggtctaaaagattttgt |
42205190 |
T |
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