View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10823_low_1 (Length: 421)
Name: NF10823_low_1
Description: NF10823
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10823_low_1 |
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Alignment Details
Target: chr1 (Bit Score: 311; Significance: 1e-175; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 311; E-Value: 1e-175
Query Start/End: Original strand, 29 - 412
Target Start/End: Complemental strand, 52948368 - 52947983
Alignment:
| Q |
29 |
tccatagaactctgccccaaatgtgaacctaccatacctatagctaaatgttcaacatataaatgagccacacgtttgttctcaacaacatagtcaccaa |
128 |
Q |
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||||||||||||| ||||| ||||||||||||||| |||||| || ||||||||||||||||||||||||||||||||||||||| |||||| ||||||| |
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| T |
52948368 |
tccatagaactctaccccacatgtgaacctaccatccctataactgaatgttcaacatataaatgagccacacgtttgttctcaataacataatcaccaa |
52948269 |
T |
|
| Q |
129 |
caacatcagtgtcattatcatcaacaatccttttgtatttatcatcttcaataacataccacaataaacgatacttaaggtgatcatcataacctaactc |
228 |
Q |
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||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||| |
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| T |
52948268 |
caatatcagtgtcattatcatcaacaatccttttgtatttatcatcttcaataacataccaccataaatgatacttaaggtgatcatcataacctaactc |
52948169 |
T |
|
| Q |
229 |
ttttagtataccagtagcttcaaagtaacaccacctatccctatcaatcccatta--actacgtgttcttgacccccagtgtaatacaaaatgtagtccc |
326 |
Q |
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||||||||||||||| ||||| ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |||||| |
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| T |
52948168 |
ttttagtataccagtcgcttcgaagtaacaccacctatccctatcaatcccattactactacgtgttcttgacccccagtgtaatacaaaatatagtccg |
52948069 |
T |
|
| Q |
327 |
taacaaattcacccccttggtgaaatacaactgacacactcatccctgtcaaattttagaaacataaactttgttaataaaccttc |
412 |
Q |
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|||||||||||||||| ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
52948068 |
taacaaattcacccccatggtgaaatacaattgacacactcatccctgtcaaattttagaaacataaactttgttaataaaccttc |
52947983 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 133 - 276
Target Start/End: Complemental strand, 31810865 - 31810722
Alignment:
| Q |
133 |
atcagtgtcattatcatcaacaatccttttgtatttatcatcttcaataacataccacaataaacgatacttaaggtgatcatcataacctaactctttt |
232 |
Q |
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| T |
31810865 |
atcagtgtcattgtcatctataatccttacatacttgtcatcctcaataatataccaccataacctatacttaaggtgatcagaatatcctaaatctttc |
31810766 |
T |
|
| Q |
233 |
agtataccagtagcttcaaagtaacaccacctatccctatcaat |
276 |
Q |
| |
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| ||| ||||||||||||||||| |||||| | ||| ||||||| |
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| T |
31810765 |
aatatcccagtagcttcaaagtagcaccacttgtccttatcaat |
31810722 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 52; Significance: 1e-20; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 133 - 284
Target Start/End: Complemental strand, 7797623 - 7797472
Alignment:
| Q |
133 |
atcagtgtcattatcatcaacaatccttttgtatttatcatcttcaataacataccacaataaacgatacttaaggtgatcatcataacctaactctttt |
232 |
Q |
| |
|
|||||||||||| ||||| | ||||||| || || ||||| ||||||| ||||||| |||| | |||||||||||||||| ||| ||||| ||||| |
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| T |
7797623 |
atcagtgtcattgtcatctataatccttaaatacttgtcatcctcaataatataccaccataacctatacttaaggtgatcaaaatatcctaaatctttc |
7797524 |
T |
|
| Q |
233 |
agtataccagtagcttcaaagtaacaccacctatccctatcaatcccattaa |
284 |
Q |
| |
|
| ||| ||||||||||||||||| |||||| | ||| |||||||| |||||| |
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|
| T |
7797523 |
aatatcccagtagcttcaaagtagcaccacttgtccttatcaatctcattaa |
7797472 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 133 - 276
Target Start/End: Original strand, 30320348 - 30320491
Alignment:
| Q |
133 |
atcagtgtcattatcatcaacaatccttttgtatttatcatcttcaataacataccacaataaacgatacttaaggtgatcatcataacctaactctttt |
232 |
Q |
| |
|
|||||||||||| ||||| | ||||||| || || ||||| ||||||| ||||||| |||| | |||||||||||||||| ||| ||||| ||||| |
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| T |
30320348 |
atcagtgtcattgtcatctataatccttacatacttgtcatcctcaataatataccaccataacctatacttaaggtgatcagaatatcctaaatctttc |
30320447 |
T |
|
| Q |
233 |
agtataccagtagcttcaaagtaacaccacctatccctatcaat |
276 |
Q |
| |
|
| ||| ||||||||||||||||| |||||| | ||| ||||||| |
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|
| T |
30320448 |
aatatcccagtagcttcaaagtagcaccacttgtccttatcaat |
30320491 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 133 - 284
Target Start/End: Complemental strand, 19393617 - 19393467
Alignment:
| Q |
133 |
atcagtgtcattatcatcaacaatccttttgtatttatcatcttcaataacataccacaataaacgatacttaaggtgatcatcataacctaactctttt |
232 |
Q |
| |
|
|||||||||||| ||||| | ||||||| || || ||||| |||| || ||||||| |||| | |||||||||||||||||||| ||||| ||||| |
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| T |
19393617 |
atcagtgtcattgtcatctataatccttacataattgtcatcctcaacaatataccaccataacct-tacttaaggtgatcatcatatcctaaatctttc |
19393519 |
T |
|
| Q |
233 |
agtataccagtagcttcaaagtaacaccacctatccctatcaatcccattaa |
284 |
Q |
| |
|
| ||| | ||||||||||||||| |||||| | ||| |||||||| |||||| |
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|
| T |
19393518 |
aatatcctagtagcttcaaagtagcaccacttgtccttatcaatctcattaa |
19393467 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 44; Significance: 7e-16; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 133 - 276
Target Start/End: Complemental strand, 22055210 - 22055067
Alignment:
| Q |
133 |
atcagtgtcattatcatcaacaatccttttgtatttatcatcttcaataacataccacaataaacgatacttaaggtgatcatcataacctaactctttt |
232 |
Q |
| |
|
|||||||||||| ||||| | ||||||| || || ||||| ||||||| ||||||| |||| | |||||||||||||||| ||| ||||| ||||| |
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|
| T |
22055210 |
atcagtgtcattgtcatctataatccttacatacttgtcatcctcaataatataccaccataacctatacttaaggtgatcagaatatcctaaatctttc |
22055111 |
T |
|
| Q |
233 |
agtataccagtagcttcaaagtaacaccacctatccctatcaat |
276 |
Q |
| |
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| ||| ||||||||||||||||| || ||| | ||| ||||||| |
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| T |
22055110 |
aatatcccagtagcttcaaagtagcaacacttgtccttatcaat |
22055067 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 32; Significance: 0.000000009; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 135 - 266
Target Start/End: Original strand, 28430160 - 28430291
Alignment:
| Q |
135 |
cagtgtcattatcatcaacaatccttttgtatttatcatcttcaataacataccacaataaacgatacttaaggtgatcatcataacctaactcttttag |
234 |
Q |
| |
|
|||||||||| ||||||| |||||| || || || || ||| ||| ||||||| |||| ||||||||||| ||||||||||| || |||| |||| |
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| T |
28430160 |
cagtgtcattgtcatcaataatcctaacatacttgtcctcctcattaatataccaccataatcgatacttaagatgatcatcatatccaaactgctttaa |
28430259 |
T |
|
| Q |
235 |
tataccagtagcttcaaagtaacaccacctat |
266 |
Q |
| |
|
|||||||| |||||||| || | |||||||| |
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|
| T |
28430260 |
aataccagtggcttcaaaatagctccacctat |
28430291 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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