View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10823_low_2 (Length: 360)
Name: NF10823_low_2
Description: NF10823
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10823_low_2 |
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Alignment Details
Target: chr7 (Bit Score: 329; Significance: 0; HSPs: 6)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 329; E-Value: 0
Query Start/End: Original strand, 19 - 355
Target Start/End: Original strand, 16989589 - 16989925
Alignment:
| Q |
19 |
ttatcgtcagaagtattacctgctgtgttgcccaaaaccggttcccaactccattctttaggagcttttttacgttcctgcttctggcaaaactttttca |
118 |
Q |
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|||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
16989589 |
ttatcgtcagaagtattacctgctgtgttgccaaaaaccggttcccaactccattctttaggagcttttttacgttcctgcttctggcaaaactttttca |
16989688 |
T |
|
| Q |
119 |
gctcttgcggtatcgttttatgaaaagaaggcctcaccaagctcaaagtgttgtatagttccaagaaattgttctggaaaggagttccagaaaggatgat |
218 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
16989689 |
gctcttgcggtatcgttttatgaaaagaaggcctcaccaagctcaaagtgttgtatagttccaagaaattgttctggaaaggagttccagaaaggatgat |
16989788 |
T |
|
| Q |
219 |
tcgcttgcgcgtttgaattttcgacaacaccttccaaataagactatttttatttctcggtgtatgtccttcgtctagaaccaacaaaccaggagtttca |
318 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
16989789 |
tcgcttgcgcgtttgaattttcgacaacaccttccaaataagactatttttatttctcggtgtatgtccttcgtctagaaccaacaaaccaggagtttca |
16989888 |
T |
|
| Q |
319 |
agtaaaacctttctcatacaactgttttcttctctct |
355 |
Q |
| |
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||||||||||||||||||||||||||||||| ||||| |
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| T |
16989889 |
agtaaaacctttctcatacaactgttttcttttctct |
16989925 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 157; E-Value: 2e-83
Query Start/End: Original strand, 60 - 336
Target Start/End: Original strand, 16821390 - 16821666
Alignment:
| Q |
60 |
ttcccaactccattctttaggagcttttttacgttcctgcttctggcaaaactttttcagctcttgcggtatcgttttatgaaaagaaggcctcaccaag |
159 |
Q |
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||||||||||||||||| || |||||||| |||||||||| ||||||||||||||||||| ||||||||||| ||| |||| |||||| |||| | | |
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| T |
16821390 |
ttcccaactccattcttcagatacttttttatattcctgcttcaggcaaaactttttcagctcatgcggtatcgtgttaggaaacgaaggcttcactagg |
16821489 |
T |
|
| Q |
160 |
ctcaaagtgttgtatagttccaagaaattgttctggaaaggagttccagaaaggatgattcgcttgcgcgtttgaattttcgacaacaccttccaaataa |
259 |
Q |
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|||||| ||||||| |||||||||||||||||||||||||||||||||||||||||||| |||||||| ||||||||||||||||| ||||||||||||| |
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| T |
16821490 |
ctcaaaatgttgtacagttccaagaaattgttctggaaaggagttccagaaaggatgatccgcttgcgggtttgaattttcgacaataccttccaaataa |
16821589 |
T |
|
| Q |
260 |
gactatttttatttctcggtgtatgtccttcgtctagaaccaacaaaccaggagtttcaagtaaaacctttctcata |
336 |
Q |
| |
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|||| ||| |||||||||| | |||||||| ||||| || ||||||||||||| |||||||||| | ||||||||| |
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| T |
16821590 |
gacttctttcatttctcggtatgtgtccttcatctagcactaacaaaccaggagattcaagtaaagcgtttctcata |
16821666 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 135; E-Value: 3e-70
Query Start/End: Original strand, 54 - 312
Target Start/End: Original strand, 17005149 - 17005407
Alignment:
| Q |
54 |
aaccggttcccaactccattctttaggagcttttttacgttcctgcttctggcaaaactttttcagctcttgcggtatcgttttatgaaaagaaggcctc |
153 |
Q |
| |
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||||||||||||| |||||||||||| ||||||||| | |||| ||||||||||||| |||||||||| || || ||||| ||| ||||||||||| || |
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| T |
17005149 |
aaccggttcccaaatccattctttagatgcttttttatggtccttcttctggcaaaacattttcagctcgtgtggcatcgtattaggaaaagaaggcttc |
17005248 |
T |
|
| Q |
154 |
accaagctcaaagtgttgtatagttccaagaaattgttctggaaaggagttccagaaaggatgattcgcttgcgcgtttgaattttcgacaacaccttcc |
253 |
Q |
| |
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|| ||||||||||||||||||||||||| ||| |||||||||||||||||||||||||||||||||||||| || ||||||| || |||||| || | || |
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| T |
17005249 |
actaagctcaaagtgttgtatagttccatgaagttgttctggaaaggagttccagaaaggatgattcgctttcgtgtttgaacttccgacaaaacttgcc |
17005348 |
T |
|
| Q |
254 |
aaataagactatttttatttctcggtgtatgtccttcgtctagaaccaacaaaccagga |
312 |
Q |
| |
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||||| ||| ||||| ||||| || |||||||||||||| || ||||||||||||||| |
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| T |
17005349 |
aaataccactttttttgtttcttggcgtatgtccttcgtcaagcaccaacaaaccagga |
17005407 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 93; E-Value: 3e-45
Query Start/End: Original strand, 84 - 336
Target Start/End: Original strand, 16965429 - 16965681
Alignment:
| Q |
84 |
ttttttacgttcctgcttctggcaaaactttttcagctcttgcggtatcgttttatgaaaagaaggcctcaccaagctcaaagtgttgtatagttccaag |
183 |
Q |
| |
|
||||||||||| | ||||||||||||| ||||| |||| | | |||||| ||| |||| |||||| ||| ||||||| ||||||||| ||||||| | |
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| T |
16965429 |
ttttttacgtttcggcttctggcaaaagttttttagcttgagggatatcgtattaggaaatgaaggcttcattaagctcagagtgttgtacagttccatg |
16965528 |
T |
|
| Q |
184 |
aaattgttctggaaaggagttccagaaaggatgattcgcttgcgcgtttgaattttcgacaacaccttccaaataagactatttttatttctcggtgtat |
283 |
Q |
| |
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||||||||||||||||| ||||||||||| || || || ||| ||||| || | | |||||| ||||||| |||||| |||| | |||||||||||| |
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| T |
16965529 |
aaattgttctggaaaggtgttccagaaagtataatccgtttgtttgtttggatctccaacaacatattccaaagaagacttttttcacttctcggtgtat |
16965628 |
T |
|
| Q |
284 |
gtccttcgtctagaaccaacaaaccaggagtttcaagtaaaacctttctcata |
336 |
Q |
| |
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||||||| || | ||||||||||||||||| |||||||||||||||||||||| |
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| T |
16965629 |
gtccttcatcgaaaaccaacaaaccaggagcttcaagtaaaacctttctcata |
16965681 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 91; E-Value: 5e-44
Query Start/End: Original strand, 95 - 313
Target Start/End: Complemental strand, 10604185 - 10603967
Alignment:
| Q |
95 |
cctgcttctggcaaaactttttcagctcttgcggtatcgttttatgaaaagaaggcctcaccaagctcaaagtgttgtatagttccaagaaattgttctg |
194 |
Q |
| |
|
||||||| |||||||| |||| ||||| |||||||||| ||| ||||||||||| |||| ||||| || ||| |||| || ||| ||||||||||||| |
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| T |
10604185 |
cctgcttatggcaaaaactttttagctcaggcggtatcgtgttaggaaaagaaggcttcactaagcttaaggtgctgtaaagctcccagaaattgttctg |
10604086 |
T |
|
| Q |
195 |
gaaaggagttccagaaaggatgattcgcttgcgcgtttgaattttcgacaacaccttccaaataagactatttttatttctcggtgtatgtccttcgtct |
294 |
Q |
| |
|
||| |||||||| ||||||||||||||||| ||| |||||| || |||||||||||||||||| |||| ||| |||||| ||||| |||||||| ||| |
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| T |
10604085 |
gaatggagttccggaaaggatgattcgcttctgcgcttgaatcttggacaacaccttccaaatatgacttctttgatttcttggtgtgtgtccttcatct |
10603986 |
T |
|
| Q |
295 |
agaaccaacaaaccaggag |
313 |
Q |
| |
|
||||| |||||||| |||| |
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| T |
10603985 |
agaactaacaaaccgggag |
10603967 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #6
Raw Score: 86; E-Value: 5e-41
Query Start/End: Original strand, 103 - 356
Target Start/End: Original strand, 16974391 - 16974644
Alignment:
| Q |
103 |
tggcaaaactttttcagctcttgcggtatcgttttatgaaaagaaggcctcaccaagctcaaagtgttgtatagttccaagaaattgttctggaaaggag |
202 |
Q |
| |
|
|||||||| |||| ||||| |||||||||| ||| |||||||||| |||||||||| || ||| |||| || ||| |||| ||||||||||| |||| |
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| T |
16974391 |
tggcaaaaacttttaagctcaggcggtatcgtgttaggaaaagaaggtttcaccaagcttaaggtgctgtaaagctcccagaagttgttctggaatggag |
16974490 |
T |
|
| Q |
203 |
ttccagaaaggatgattcgcttgcgcgtttgaattttcgacaacaccttccaaataagactatttttatttctcggtgtatgtccttcgtctagaaccaa |
302 |
Q |
| |
|
|||| ||||||||||| ||||| ||||||||| ||||| ||||||||||||||| |||| ||| |||||| || || ||||||||||||||||| | |
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|
| T |
16974491 |
ttccggaaaggatgatacgcttctgcgtttgaagcttcgaaaacaccttccaaatatgacttctttgatttcttggcgtgtgtccttcgtctagaactat |
16974590 |
T |
|
| Q |
303 |
caaaccaggagtttcaagtaaaacctttctcatacaactgttttcttctctctc |
356 |
Q |
| |
|
||||||||||| | ||||| |||||||| |||| || |||| |||||||||| |
|
|
| T |
16974591 |
caaaccaggagaattaagtagaacctttcgcatatcacagtttccttctctctc |
16974644 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 78; Significance: 3e-36; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 78; E-Value: 3e-36
Query Start/End: Original strand, 107 - 356
Target Start/End: Complemental strand, 35265680 - 35265432
Alignment:
| Q |
107 |
aaaactttttcagctcttgcggtatcgttttatgaaaagaaggcctcaccaagctcaaagtgttgtatagttccaagaaattgttctggaaaggagttcc |
206 |
Q |
| |
|
|||||||||| ||||| ||||||| || ||| ||||||||||| |||| ||||| || ||| |||| || ||| |||||||||||||||| |||||||| |
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|
| T |
35265680 |
aaaacttttt-agctcaggcggtattgtgttaggaaaagaaggcttcactaagcttaaggtgctgtaaagctcccagaaattgttctggaatggagttcc |
35265582 |
T |
|
| Q |
207 |
agaaaggatgattcgcttgcgcgtttgaattttcgacaacaccttccaaataagactatttttatttctcggtgtatgtccttcgtctagaaccaacaaa |
306 |
Q |
| |
|
|||||||| || ||||| | ||||||| ||| | ||||||||||||||| |||| ||| |||||| ||||| ||||||||||||||||| ||||| |
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| T |
35265581 |
ggaaaggataatacgcttctgtgtttgaagcttcaaaaacaccttccaaatatgacttctttgatttcttggtgtgtgtccttcgtctagaactaacaac |
35265482 |
T |
|
| Q |
307 |
ccaggagtttcaagtaaaacctttctcatacaactgttttcttctctctc |
356 |
Q |
| |
|
||||||| | ||||| |||||||| |||| || |||| |||||||||| |
|
|
| T |
35265481 |
ccaggagaattaagtagaacctttcgcatatcacagtttccttctctctc |
35265432 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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